Search results for family: 1147, total 66 Unipeptides retrieved.


Related families 24 families found.
Excluded Unipeptides View
Thumbnail sketch of subfamilies
 no tree available
Select Unipeptides in panel below to see alignment and detailed phylogeny
Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

View results sorted by

Subfamily
1  2  3  4  5  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
amaj2277  interProC_AJ803442Antirrhinum majus (snapdragon) 
cann14348 CA519025Capsicum annuum (pepper) 
cric4707 S_BE640831Ceratopteris richardii (water sprite) 
gsoj1194 PUT-148a-Glycine_soja-1856Glycine soja (wild soybean) 
gsoj298 PUT-148a-Glycine_soja-486Glycine soja (wild soybean) 
ghir61900 TC30894Gossypium hirsutum (cotton (tetraploid)) 
inil1334 C_BJ566900Ipomoea nil (qian niu) 
lsat51316 Lsa.7467Lactuca sativa (lettuce) 
lesc62005 Les.2808Lycopersicon esculentum (tomato) 
mtru74474 TC97432Medicago truncatula (barrel medic) 
mtru80456 TC108958Medicago truncatula (barrel medic) 
osat212742 Os11g38670Oryza sativa (rice) 
pame2740 211608Persea americana (avocado) 
pvul136 PUT-148a-Phaseolus_vulgaris-172Phaseolus vulgaris (common bean) 
pvul1757 PUT-148a-Phaseolus_vulgaris-2262Phaseolus vulgaris (common bean) 
pvul4740 PUT-148a-Phaseolus_vulgaris-6124Phaseolus vulgaris (common bean) 
ppat28046 Ppa.6101Physcomitrella patens () 
pgla3239 TC5363Picea glauca (white spruce) 
ptae47840 TC59910Pinus taeda (loblolly pine) 
ptae52543 TC60336Pinus taeda (loblolly pine) 
ptae65800 TC60337Pinus taeda (loblolly pine) 
shen4733 312425Saruma henryi () 
stub36894 Stu.8427Solanum tuberosum (potato) 
stub38560 Stu.807Solanum tuberosum (potato) 
spro5727 S_BF655573Sorghum propinquum () 
taes146912 Ta.10226Triticum aestivum (bread wheat) 
vvin27624 Vvi.6241Vitis vinifera (wine grape) 
vvin27899 Vvi.10827Vitis vinifera (wine grape) 
vvin34608 Vvi.7412Vitis vinifera (wine grape) 
zmay65710 Zm.13969Zea mays (corn) 
zmay70390 Zm.4572Zea mays (corn) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
amaj55  interProS_AJ799813Antirrhinum majus (snapdragon) 
atha83368 At3g58570Arabidopsis thaliana (thale cress) 
atha89324 At3g58510Arabidopsis thaliana (thale cress) 
atha90186 At2g42520Arabidopsis thaliana (thale cress) 
aoff973 228270Asparagus officinalis (garden asparagus) 
amar1020 S_BM172904Avicennia marina () 
bvul23032 TC757Beta vulgaris (sugarbeet) 
bnap15359 Bna.2046Brassica napus (rapeseed) 
brap568 S_BG544002Brassica rapa (field mustard) 
brap7546 S_BG544002.11kBrassica rapa (field mustard) 
cric4119 S_CV735540Ceratopteris richardii (water sprite) 
csin5821 Csi.1530Citrus sinensis (orange) 
ecal8081 38500Eschscholzia californica (california poppy) 
garb6793 S_BQ411289Gossypium arboreum (tree cotton) 
garb9788 S_BQ407161Gossypium arboreum (tree cotton) 
ghir53600 TC41664Gossypium hirsutum (cotton (tetraploid)) 
ghir64806 BQ407161Gossypium hirsutum (cotton (tetraploid)) 
ghir70518 TC33787Gossypium hirsutum (cotton (tetraploid)) 
hvul53135 Hv.10750Hordeum vulgare (barley) 
lusi817 S_CV478719Linum usitatissimum (flax) 
mcry16775 TC6005Mesembryanthemum crystallinum (iceplant) 
osat155093 Os03g59050Oryza sativa (rice) 
osat191775 7490.m00074 Protein sequence may be in errorOryza sativa (rice) 
osat211581 6315.m00123 Protein sequence may be in errorOryza sativa (rice) 
ppis982 S_BX784194Pinus pinaster (maritime pine) 
ptae34765 TC74928Pinus taeda (loblolly pine) 
pdel3344 S_CX169898Populus deltoides () 
peup6332 S_AJ769191Populus euphratica () 
scer9541 BE705102Secale cereale (rye) 
wmir329 347024Welwitschia mirabilis () 
zele12686 PUT-148a-Zinnia_elegans-7867Zinnia elegans (zinnia) 
Subfamily ID: 3( Select Subfamily     Clear Subfamily)
csin10896  interProCsi.7425Citrus sinensis (orange) 
parm991 S_CB820535Prunus armeniaca (apricot) 
Subfamily ID: 4( Select Subfamily     Clear Subfamily)
atri5833  interPro195681Amborella trichopoda (amborella) 
Subfamily ID: 5( Select Subfamily     Clear Subfamily)
osat193638  interProOs06g40020Oryza sativa (rice) 
Species
Amborella trichopoda  Antirrhinum majus  Arabidopsis thaliana  Asparagus officinalis  Avicennia marina  Beta vulgaris  Brassica napus  Brassica rapa  Capsicum annuum  Ceratopteris richardii  Citrus sinensis  Eschscholzia californica  Glycine soja  Gossypium arboreum  Gossypium hirsutum  Hordeum vulgare  Ipomoea nil  Lactuca sativa  Linum usitatissimum  Lycopersicon esculentum  Medicago truncatula  Mesembryanthemum crystallinum  Oryza sativa  Persea americana  Phaseolus vulgaris  Physcomitrella patens  Picea glauca  Pinus pinaster  Pinus taeda  Populus deltoides  Populus euphratica  Prunus armeniaca  Saruma henryi  Secale cereale  Solanum tuberosum  Sorghum propinquum  Triticum aestivum  Vitis vinifera  Welwitschia mirabilis  Zea mays  Zinnia elegans  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Amborella trichopoda (amborella)  ( Select Species     Clear Species)
  atri5833 1956814
Antirrhinum majus (snapdragon)  ( Select Species     Clear Species)
  amaj2277 C_AJ8034421
  amaj55 S_AJ7998132
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha83368 At3g585702
  atha89324 At3g585102
  atha90186 At2g425202
Asparagus officinalis (garden asparagus)  ( Select Species     Clear Species)
  aoff973 2282702
Avicennia marina ()  ( Select Species     Clear Species)
  amar1020 S_BM1729042
Beta vulgaris (sugarbeet)  ( Select Species     Clear Species)
  bvul23032 TC7572
Brassica napus (rapeseed)  ( Select Species     Clear Species)
  bnap15359 Bna.20462
Brassica rapa (field mustard)  ( Select Species     Clear Species)
  brap568 S_BG5440022
  brap7546 S_BG544002.11k2
Capsicum annuum (pepper)  ( Select Species     Clear Species)
  cann14348 CA5190251
Ceratopteris richardii (water sprite)  ( Select Species     Clear Species)
  cric4119 S_CV7355402
  cric4707 S_BE6408311
Citrus sinensis (orange)  ( Select Species     Clear Species)
  csin10896 Csi.74253
  csin5821 Csi.15302
Eschscholzia californica (california poppy)  ( Select Species     Clear Species)
  ecal8081 385002
Glycine soja (wild soybean)  ( Select Species     Clear Species)
  gsoj1194 PUT-148a-Glycine_soja-18561
  gsoj298 PUT-148a-Glycine_soja-4861
Gossypium arboreum (tree cotton)  ( Select Species     Clear Species)
  garb6793 S_BQ4112892
  garb9788 S_BQ4071612
Gossypium hirsutum (cotton (tetraploid))  ( Select Species     Clear Species)
  ghir53600 TC416642
  ghir61900 TC308941
  ghir64806 BQ4071612
  ghir70518 TC337872
Hordeum vulgare (barley)  ( Select Species     Clear Species)
  hvul53135 Hv.107502
Ipomoea nil (qian niu)  ( Select Species     Clear Species)
  inil1334 C_BJ5669001
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat51316 Lsa.74671
Linum usitatissimum (flax)  ( Select Species     Clear Species)
  lusi817 S_CV4787192
Lycopersicon esculentum (tomato)  ( Select Species     Clear Species)
  lesc62005 Les.28081
Medicago truncatula (barrel medic)  ( Select Species     Clear Species)
  mtru74474 TC974321
  mtru80456 TC1089581
Mesembryanthemum crystallinum (iceplant)  ( Select Species     Clear Species)
  mcry16775 TC60052
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat155093 Os03g590502
  osat191775 7490.m00074 Protein sequence may be in error2
  osat193638 Os06g400205
  osat211581 6315.m00123 Protein sequence may be in error2
  osat212742 Os11g386701
Persea americana (avocado)  ( Select Species     Clear Species)
  pame2740 2116081
Phaseolus vulgaris (common bean)  ( Select Species     Clear Species)
  pvul136 PUT-148a-Phaseolus_vulgaris-1721
  pvul1757 PUT-148a-Phaseolus_vulgaris-22621
  pvul4740 PUT-148a-Phaseolus_vulgaris-61241
Physcomitrella patens ()  ( Select Species     Clear Species)
  ppat28046 Ppa.61011
Picea glauca (white spruce)  ( Select Species     Clear Species)
  pgla3239 TC53631
Pinus pinaster (maritime pine)  ( Select Species     Clear Species)
  ppis982 S_BX7841942
Pinus taeda (loblolly pine)  ( Select Species     Clear Species)
  ptae34765 TC749282
  ptae47840 TC599101
  ptae52543 TC603361
  ptae65800 TC603371
Populus deltoides ()  ( Select Species     Clear Species)
  pdel3344 S_CX1698982
Populus euphratica ()  ( Select Species     Clear Species)
  peup6332 S_AJ7691912
Prunus armeniaca (apricot)  ( Select Species     Clear Species)
  parm991 S_CB8205353
Saruma henryi ()  ( Select Species     Clear Species)
  shen4733 3124251
Secale cereale (rye)  ( Select Species     Clear Species)
  scer9541 BE7051022
Solanum tuberosum (potato)  ( Select Species     Clear Species)
  stub36894 Stu.84271
  stub38560 Stu.8071
Sorghum propinquum ()  ( Select Species     Clear Species)
  spro5727 S_BF6555731
Triticum aestivum (bread wheat)  ( Select Species     Clear Species)
  taes146912 Ta.102261
Vitis vinifera (wine grape)  ( Select Species     Clear Species)
  vvin27624 Vvi.62411
  vvin27899 Vvi.108271
  vvin34608 Vvi.74121
Welwitschia mirabilis ()  ( Select Species     Clear Species)
  wmir329 3470242
Zea mays (corn)  ( Select Species     Clear Species)
  zmay65710 Zm.139691
  zmay70390 Zm.45721
Zinnia elegans (zinnia)  ( Select Species     Clear Species)
  zele12686 PUT-148a-Zinnia_elegans-78672
Subfamily
1  2  3  4  5  

Subfamily ID: 1

SEQUENCE: amaj2277 LENGTH: 279 aa
IPR001410
DEAD/DEAH box helicase
PS50136 [18-272]T 46.405 PS50136 HELICASE HELICASE
IPR001650
Helicase, C-terminal
PF00271 [215-279]T 6.8e-28 PF00271 Helicase_C Helicase_C
SM00490 [210-278]T 8.5e-15 SM00490 no description no description
IPR011545
DEAD/DEAH box helicase, N-terminal
PF00270 [16-141]T 4.2e-46 PF00270 DEAD DEAD
SM00487 [4-167]T 3.9e-28 SM00487 no description no description
no IPR
PTHR10967 [16-279]T 5e-89 PTHR10967 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
PTHR10967:SF1 [16-279]T 5e-89 PTHR10967:SF1 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
SSF52540 [18-142]T 4.7e-39 SSF52540 P-loop containing nucleoside triphosphate hydrolases[143-279]T 1.2e-27 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases

Subfamily ID: 2

SEQUENCE: amaj55 LENGTH: 193 aa
IPR001410
DEAD/DEAH box helicase
PS50136 [36-126]T 24.967 PS50136 HELICASE HELICASE
IPR001650
Helicase, C-terminal
PF00271 [52-128]T 2.4e-42 PF00271 Helicase_C Helicase_C
SM00490 [47-128]T 1.5e-34 SM00490 no description no description
no IPR
PTHR10967 [4-188]T 5.8e-49 PTHR10967 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
PTHR10967:SF1 [4-188]T 5.8e-49 PTHR10967:SF1 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
SSF52540 [4-168]T 9.9e-41 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases

Subfamily ID: 3

SEQUENCE: csin10896 LENGTH: 240 aa
IPR001410
DEAD/DEAH box helicase
PS50136 [223-240]T 9.101 PS50136 HELICASE HELICASE
IPR011545
DEAD/DEAH box helicase, N-terminal
PF00270 [166-240]T 3.9e-21 PF00270 DEAD DEAD
no IPR
PTHR10967 [116-240]T 2.6e-33 PTHR10967 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
PTHR10967:SF1 [116-240]T 2.6e-33 PTHR10967:SF1 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
SSF52540 [93-240]T 4.2e-20 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases

Subfamily ID: 4

SEQUENCE: atri5833 LENGTH: 379 aa
IPR001410
DEAD/DEAH box helicase
PS50136 [9-280]T 49.102 PS50136 HELICASE HELICASE
IPR001650
Helicase, C-terminal
PF00271 [206-282]T 9e-44 PF00271 Helicase_C Helicase_C
SM00490 [201-282]T 2.7e-35 SM00490 no description no description
IPR011545
DEAD/DEAH box helicase, N-terminal
PF00270 [7-132]T 5e-45 PF00270 DEAD DEAD
SM00487 [2-158]T 8.7e-24 SM00487 no description no description
no IPR
PTHR10967 [6-349]T 1.4e-110 PTHR10967 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
PTHR10967:SF1 [6-349]T 1.4e-110 PTHR10967:SF1 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
SSF52540 [4-312]T 3.8e-44 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases

Subfamily ID: 5

SEQUENCE: osat193638 LENGTH: 479 aa
IPR000629
ATP-dependent helicase, DEAD-box
PS00039 [123-131]T 8e-5 PS00039 DEAD_ATP_HELICASE DEAD_ATP_HELICASE
IPR001410
DEAD/DEAH box helicase
PS50136 [47-332]T 51.819 PS50136 HELICASE HELICASE
IPR001650
Helicase, C-terminal
PF00271 [246-322]T 2.4e-44 PF00271 Helicase_C Helicase_C
SM00490 [241-322]T 2e-34 SM00490 no description no description
IPR011545
DEAD/DEAH box helicase, N-terminal
PF00270 [1-170]T 7.8e-58 PF00270 DEAD DEAD
SM00487 [2-196]T 6.3e-43 SM00487 no description no description
no IPR
PTHR10967 [1-398]T 2.8e-122 PTHR10967 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
PTHR10967:SF1 [1-398]T 2.8e-122 PTHR10967:SF1 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
SSF52540 [1-171]T 1.2e-49 SSF52540 P-loop containing nucleoside triphosphate hydrolases[172-366]T 2.2e-42 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases
Subfamily
1  2  3  4  5  

Sub family ID: 0
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR002086: Aldehyde dehydrogenase
Biological ProcessGO:0008152, metabolism
Molecular FunctionGO:0016491, oxidoreductase activity
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Sub family ID: 1
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001650: Helicase, C-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Sub family ID: 2
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001650: Helicase, C-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Sub family ID: 3
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Sub family ID: 4
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001650: Helicase, C-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Sub family ID: 5
IPR000629: ATP-dependent helicase, DEAD-box
Molecular FunctionGO:0003676, nucleic acid binding
GO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001650: Helicase, C-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Department of Biology | University of North Carolina at Chapel Hill
Comments / Questions