Search results for family: 12660, total 10 Unipeptides retrieved.


Related families 2 families found.
Excluded Unipeptides View
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Select Unipeptides in panel below to see alignment and detailed phylogeny
Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
brap617 S_CV545138Brassica rapa (field mustard) 
brap6975 S_CV545138.11kBrassica rapa (field mustard) 
gmax84767 Gma.1011Glycine max (soybean) 
lesc69763  interProLes.8659Lycopersicon esculentum (tomato) 
nsyl450 C_BP747752Nicotiana sylvestris (wood tobacco) 
peur2560 S_CX182096Populus euramericana () 
vvin28484 Vvi.8257Vitis vinifera (wine grape) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
ptae49404 TC63057Pinus taeda (loblolly pine) 
spro632  interProS_BF588231Sorghum propinquum () 
zmay65528 Zm.26673Zea mays (corn) 
Species
Brassica rapa  Glycine max  Lycopersicon esculentum  Nicotiana sylvestris  Pinus taeda  Populus euramericana  Sorghum propinquum  Vitis vinifera  Zea mays  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Brassica rapa (field mustard)  ( Select Species     Clear Species)
  brap617 S_CV5451381
  brap6975 S_CV545138.11k1
Glycine max (soybean)  ( Select Species     Clear Species)
  gmax84767 Gma.10111
Lycopersicon esculentum (tomato)  ( Select Species     Clear Species)
  lesc69763 Les.86591
Nicotiana sylvestris (wood tobacco)  ( Select Species     Clear Species)
  nsyl450 C_BP7477521
Pinus taeda (loblolly pine)  ( Select Species     Clear Species)
  ptae49404 TC630572
Populus euramericana ()  ( Select Species     Clear Species)
  peur2560 S_CX1820961
Sorghum propinquum ()  ( Select Species     Clear Species)
  spro632 S_BF5882312
Vitis vinifera (wine grape)  ( Select Species     Clear Species)
  vvin28484 Vvi.82571
Zea mays (corn)  ( Select Species     Clear Species)
  zmay65528 Zm.266732
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: lesc69763 LENGTH: 208 aa
IPR003395
SMC protein, N-terminal
PF02463 [2-203]T 6.9e-15 PF02463 SMC_N SMC_N
no IPR
PS50101 [26-44]T 8.939 PS50101 ATP_GTP_A2 ATP_GTP_A2
PTHR18937 [22-208]T 2.6e-99 PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
PTHR18937:SF12 [22-208]T 2.6e-99 PTHR18937:SF12 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1
SSF52540 [2-189]T 1.7e-14 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases

Subfamily ID: 2

SEQUENCE: spro632 LENGTH: 117 aa
IPR003395
SMC protein, N-terminal
PF02463 [8-117]T 3.2e-09 PF02463 SMC_N SMC_N
no IPR
PS50101 [32-50]T 8.939 PS50101 ATP_GTP_A2 ATP_GTP_A2
PTHR18937 [28-117]T 1.8e-38 PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
PTHR18937:SF12 [28-117]T 1.8e-38 PTHR18937:SF12 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1
SSF52540 [30-117]T 4e-06 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases
Subfamily
1  2  

Sub family ID: 1
IPR003395: SMC protein, N-terminal
Biological ProcessGO:0007059, chromosome segregation
Cellular ComponentGO:0005634, nucleus
GO:0005694, chromosome
Molecular FunctionGO:0005524, ATP binding
 
Sub family ID: 2
IPR003395: SMC protein, N-terminal
Biological ProcessGO:0007059, chromosome segregation
Cellular ComponentGO:0005634, nucleus
GO:0005694, chromosome
Molecular FunctionGO:0005524, ATP binding
 
Department of Biology | University of North Carolina at Chapel Hill
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