Search results for family: 1376, total 26 Unipeptides retrieved.


Related families 17 families found.
Excluded Unipeptides View
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Select Unipeptides in panel below to see alignment and detailed phylogeny
Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
acep15944  interProCF442969Allium cepa (onion) 
acep17621 CF444265Allium cepa (onion) 
atha102892 At5g08610Arabidopsis thaliana (thale cress) 
atha83112 At5g08620Arabidopsis thaliana (thale cress) 
atha83657 At2g07750Arabidopsis thaliana (thale cress) 
atha96003 At1g63250Arabidopsis thaliana (thale cress) 
atha99731 At5g63630Arabidopsis thaliana (thale cress) 
eesu563 C_BG466187Euphorbia esula (leafy spurge) 
gsoj3806 PUT-148a-Glycine_soja-5833Glycine soja (wild soybean) 
garb8935 S_BF275099Gossypium arboreum (tree cotton) 
ghir46755 TC36203Gossypium hirsutum (cotton (tetraploid)) 
ghir56246 TC38357Gossypium hirsutum (cotton (tetraploid)) 
grai1508 Gra.1555Gossypium raimondii () 
lsat50633 Lsa.6763Lactuca sativa (lettuce) 
mtru81483 TC103329Medicago truncatula (barrel medic) 
osat134931 Os06g33520Oryza sativa (rice) 
osat147148 Os01g43130Oryza sativa (rice) 
osat166399 3776.m00165 Protein sequence may be in errorOryza sativa (rice) 
osat174334 Os01g43120Oryza sativa (rice) 
osat191451 Os02g57980Oryza sativa (rice) 
osat214886 3848.m00190 Protein sequence may be in errorOryza sativa (rice) 
pvir1534 S_DN145739Panicum virgatum (switchgrass) 
ptae41706 TC61544Pinus taeda (loblolly pine) 
zmay70987 Zm.25317Zea mays (corn) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
acep17974  interProCF450671Allium cepa (onion) 
ppat27671 Ppa.5606Physcomitrella patens () 
Species
Allium cepa  Arabidopsis thaliana  Euphorbia esula  Glycine soja  Gossypium arboreum  Gossypium hirsutum  Gossypium raimondii  Lactuca sativa  Medicago truncatula  Oryza sativa  Panicum virgatum  Physcomitrella patens  Pinus taeda  Zea mays  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Allium cepa (onion)  ( Select Species     Clear Species)
  acep15944 CF4429691
  acep17621 CF4442651
  acep17974 CF4506712
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha102892 At5g086101
  atha83112 At5g086201
  atha83657 At2g077501
  atha96003 At1g632501
  atha99731 At5g636301
Euphorbia esula (leafy spurge)  ( Select Species     Clear Species)
  eesu563 C_BG4661871
Glycine soja (wild soybean)  ( Select Species     Clear Species)
  gsoj3806 PUT-148a-Glycine_soja-58331
Gossypium arboreum (tree cotton)  ( Select Species     Clear Species)
  garb8935 S_BF2750991
Gossypium hirsutum (cotton (tetraploid))  ( Select Species     Clear Species)
  ghir46755 TC362031
  ghir56246 TC383571
Gossypium raimondii ()  ( Select Species     Clear Species)
  grai1508 Gra.15551
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat50633 Lsa.67631
Medicago truncatula (barrel medic)  ( Select Species     Clear Species)
  mtru81483 TC1033291
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat134931 Os06g335201
  osat147148 Os01g431301
  osat166399 3776.m00165 Protein sequence may be in error1
  osat174334 Os01g431201
  osat191451 Os02g579801
  osat214886 3848.m00190 Protein sequence may be in error1
Panicum virgatum (switchgrass)  ( Select Species     Clear Species)
  pvir1534 S_DN1457391
Physcomitrella patens ()  ( Select Species     Clear Species)
  ppat27671 Ppa.56062
Pinus taeda (loblolly pine)  ( Select Species     Clear Species)
  ptae41706 TC615441
Zea mays (corn)  ( Select Species     Clear Species)
  zmay70987 Zm.253171
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: acep15944 LENGTH: 233 aa
IPR000629
ATP-dependent helicase, DEAD-box
PS00039 [59-67]T 8e-5 PS00039 DEAD_ATP_HELICASE DEAD_ATP_HELICASE
IPR001410
DEAD/DEAH box helicase
PS50136 [1-233]T 29.607 PS50136 HELICASE HELICASE
IPR011545
DEAD/DEAH box helicase, N-terminal
PF00270 [2-102]T 1e-31 PF00270 DEAD DEAD
no IPR
PTHR10967 [2-231]T 5e-51 PTHR10967 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
PTHR10967:SF1 [2-231]T 5e-51 PTHR10967:SF1 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
SSF52540 [5-104]T 4.3e-26 SSF52540 P-loop containing nucleoside triphosphate hydrolases[105-232]T 1.8e-13 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases

Subfamily ID: 2

SEQUENCE: acep17974 LENGTH: 253 aa
IPR000629
ATP-dependent helicase, DEAD-box
PS00039 [62-70]T 8e-5 PS00039 DEAD_ATP_HELICASE DEAD_ATP_HELICASE
IPR001410
DEAD/DEAH box helicase
PS50136 [1-253]T 34.168 PS50136 HELICASE HELICASE
IPR001650
Helicase, C-terminal
PF00271 [179-252]T 4.6e-21 PF00271 Helicase_C Helicase_C
SM00490 [174-253]T 3.3e-15 SM00490 no description no description
IPR011545
DEAD/DEAH box helicase, N-terminal
PF00270 [10-105]T 2.9e-29 PF00270 DEAD DEAD
no IPR
PTHR10967 [1-252]T 9.1e-64 PTHR10967 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
PTHR10967:SF1 [1-252]T 9.1e-64 PTHR10967:SF1 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
SSF52540 [1-106]T 5.2e-24 SSF52540 P-loop containing nucleoside triphosphate hydrolases[107-252]T 1.3e-25 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases
Subfamily
1  2  

Sub family ID: 0
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Sub family ID: 1
IPR000629: ATP-dependent helicase, DEAD-box
Molecular FunctionGO:0003676, nucleic acid binding
GO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Sub family ID: 2
IPR000629: ATP-dependent helicase, DEAD-box
Molecular FunctionGO:0003676, nucleic acid binding
GO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001650: Helicase, C-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Department of Biology | University of North Carolina at Chapel Hill
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