Search results for family: 1446, total 44 Unipeptides retrieved.


Related families 21 families found.
Excluded Unipeptides View
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Select Unipeptides in panel below to see alignment and detailed phylogeny
Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
acep13197  interProCF438912Allium cepa (onion) 
acep13551 CF444256Allium cepa (onion) 
acep17342 TC2781Allium cepa (onion) 
atri7483 197694Amborella trichopoda (amborella) 
atha108404 At5g26742Arabidopsis thaliana (thale cress) 
amar835 S_CD777195Avicennia marina () 
bvul20061 BQ489634Beta vulgaris (sugarbeet) 
cann19516 TC4097Capsicum annuum (pepper) 
cric5630 C_BE642027Ceratopteris richardii (water sprite) 
ccle1411 PUT-148a-Citrus_clementina-2083Citrus clementina () 
ecal10288 41086Eschscholzia californica (california poppy) 
ecal6240 40798Eschscholzia californica (california poppy) 
ghyb3362 326415Gerbera hybrid.cultivar () 
gmax78108 Gma.12796Glycine max (soybean) 
gmax85208 Gma.20442Glycine max (soybean) 
garb5739 S_BF277604Gossypium arboreum (tree cotton) 
ghir62494 BF277604Gossypium hirsutum (cotton (tetraploid)) 
ghir75370 TC32655Gossypium hirsutum (cotton (tetraploid)) 
hvul57940 Hv.5525Hordeum vulgare (barley) 
lsat49900 Lsa.6015Lactuca sativa (lettuce) 
mtru79172 TC97849Medicago truncatula (barrel medic) 
mtru79644 BG453102Medicago truncatula (barrel medic) 
mcry16853 TC6377Mesembryanthemum crystallinum (iceplant) 
nben9092 CN744851Nicotiana benthamiana (wild tobacco) 
nsyl4998 S_BP746290Nicotiana sylvestris (wood tobacco) 
osat129564 Os03g61220Oryza sativa (rice) 
osat135082 5763.m00108 Protein sequence may be in errorOryza sativa (rice) 
osat190108 2340.m00170 Protein sequence may be in errorOryza sativa (rice) 
pglu1005 S_CD726656Pennisetum glaucum (cattail millet) 
pvul3446 PUT-148a-Phaseolus_vulgaris-4464Phaseolus vulgaris (common bean) 
ptae45104 TC78890Pinus taeda (loblolly pine) 
pdel2373 S_CX172631Populus deltoides () 
smil3187 C_CV167728Salvia miltiorrhiza (redroot sage) 
stub32594 Stu.522Solanum tuberosum (potato) 
sreb3881 S_BG522302Stevia rebaudiana (stevia) 
taes123855 Ta.491Triticum aestivum (bread wheat) 
vvin28175 Vvi.7087Vitis vinifera (wine grape) 
wmir2603 349720Welwitschia mirabilis () 
zmay75393 Zm.17162Zea mays (corn) 
zmay75958 Zm.27502Zea mays (corn) 
zmay76397 Zm.22438Zea mays (corn) 
zele14539 PUT-148a-Zinnia_elegans-11002Zinnia elegans (zinnia) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
lsat53164  interProLsa.9453Lactuca sativa (lettuce) 
osat135173 Os07g05050Oryza sativa (rice) 
Species
Allium cepa  Amborella trichopoda  Arabidopsis thaliana  Avicennia marina  Beta vulgaris  Capsicum annuum  Ceratopteris richardii  Citrus clementina  Eschscholzia californica  Gerbera hybrid.cultivar  Glycine max  Gossypium arboreum  Gossypium hirsutum  Hordeum vulgare  Lactuca sativa  Medicago truncatula  Mesembryanthemum crystallinum  Nicotiana benthamiana  Nicotiana sylvestris  Oryza sativa  Pennisetum glaucum  Phaseolus vulgaris  Pinus taeda  Populus deltoides  Salvia miltiorrhiza  Solanum tuberosum  Stevia rebaudiana  Triticum aestivum  Vitis vinifera  Welwitschia mirabilis  Zea mays  Zinnia elegans  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Allium cepa (onion)  ( Select Species     Clear Species)
  acep13197 CF4389121
  acep13551 CF4442561
  acep17342 TC27811
Amborella trichopoda (amborella)  ( Select Species     Clear Species)
  atri7483 1976941
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha108404 At5g267421
Avicennia marina ()  ( Select Species     Clear Species)
  amar835 S_CD7771951
Beta vulgaris (sugarbeet)  ( Select Species     Clear Species)
  bvul20061 BQ4896341
Capsicum annuum (pepper)  ( Select Species     Clear Species)
  cann19516 TC40971
Ceratopteris richardii (water sprite)  ( Select Species     Clear Species)
  cric5630 C_BE6420271
Citrus clementina ()  ( Select Species     Clear Species)
  ccle1411 PUT-148a-Citrus_clementina-20831
Eschscholzia californica (california poppy)  ( Select Species     Clear Species)
  ecal10288 410861
  ecal6240 407981
Gerbera hybrid.cultivar ()  ( Select Species     Clear Species)
  ghyb3362 3264151
Glycine max (soybean)  ( Select Species     Clear Species)
  gmax78108 Gma.127961
  gmax85208 Gma.204421
Gossypium arboreum (tree cotton)  ( Select Species     Clear Species)
  garb5739 S_BF2776041
Gossypium hirsutum (cotton (tetraploid))  ( Select Species     Clear Species)
  ghir62494 BF2776041
  ghir75370 TC326551
Hordeum vulgare (barley)  ( Select Species     Clear Species)
  hvul57940 Hv.55251
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat49900 Lsa.60151
  lsat53164 Lsa.94532
Medicago truncatula (barrel medic)  ( Select Species     Clear Species)
  mtru79172 TC978491
  mtru79644 BG4531021
Mesembryanthemum crystallinum (iceplant)  ( Select Species     Clear Species)
  mcry16853 TC63771
Nicotiana benthamiana (wild tobacco)  ( Select Species     Clear Species)
  nben9092 CN7448511
Nicotiana sylvestris (wood tobacco)  ( Select Species     Clear Species)
  nsyl4998 S_BP7462901
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat129564 Os03g612201
  osat135082 5763.m00108 Protein sequence may be in error1
  osat135173 Os07g050502
  osat190108 2340.m00170 Protein sequence may be in error1
Pennisetum glaucum (cattail millet)  ( Select Species     Clear Species)
  pglu1005 S_CD7266561
Phaseolus vulgaris (common bean)  ( Select Species     Clear Species)
  pvul3446 PUT-148a-Phaseolus_vulgaris-44641
Pinus taeda (loblolly pine)  ( Select Species     Clear Species)
  ptae45104 TC788901
Populus deltoides ()  ( Select Species     Clear Species)
  pdel2373 S_CX1726311
Salvia miltiorrhiza (redroot sage)  ( Select Species     Clear Species)
  smil3187 C_CV1677281
Solanum tuberosum (potato)  ( Select Species     Clear Species)
  stub32594 Stu.5221
Stevia rebaudiana (stevia)  ( Select Species     Clear Species)
  sreb3881 S_BG5223021
Triticum aestivum (bread wheat)  ( Select Species     Clear Species)
  taes123855 Ta.4911
Vitis vinifera (wine grape)  ( Select Species     Clear Species)
  vvin28175 Vvi.70871
Welwitschia mirabilis ()  ( Select Species     Clear Species)
  wmir2603 3497201
Zea mays (corn)  ( Select Species     Clear Species)
  zmay75393 Zm.171621
  zmay75958 Zm.275021
  zmay76397 Zm.224381
Zinnia elegans (zinnia)  ( Select Species     Clear Species)
  zele14539 PUT-148a-Zinnia_elegans-110021
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: acep13197 LENGTH: 229 aa
IPR001410
DEAD/DEAH box helicase
PS50136 [1-136]T 26.494 PS50136 HELICASE HELICASE
IPR001650
Helicase, C-terminal
PF00271 [53-129]T 3e-39 PF00271 Helicase_C Helicase_C
SM00490 [49-129]T 6.3e-31 SM00490 no description no description
no IPR
PTHR10967 [1-202]T 3.2e-47 PTHR10967 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
PTHR10967:SF1 [1-202]T 3.2e-47 PTHR10967:SF1 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
SSF52540 [6-174]T 5e-42 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases

Subfamily ID: 2

SEQUENCE: lsat53164 LENGTH: 183 aa
IPR001410
DEAD/DEAH box helicase
PS50136 [1-116]T 24.768 PS50136 HELICASE HELICASE
IPR001650
Helicase, C-terminal
PF00271 [33-109]T 1.5e-39 PF00271 Helicase_C Helicase_C
SM00490 [29-109]T 1.1e-30 SM00490 no description no description
no IPR
PTHR10967 [8-142]T 1.7e-40 PTHR10967 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
PTHR10967:SF1 [8-142]T 1.7e-40 PTHR10967:SF1 DEAD BOX ATP-DEPENDENT RNA HELICASE DEAD BOX ATP-DEPENDENT RNA HELICASE
SSF52540 [8-149]T 7.7e-38 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases
Subfamily
1  2  

Sub family ID: 0
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Sub family ID: 1
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001650: Helicase, C-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Sub family ID: 2
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001650: Helicase, C-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Department of Biology | University of North Carolina at Chapel Hill
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