Search results for family: 15664, total 6 Unipeptides retrieved.


Related families 2 families found.
Excluded Unipeptides View
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Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
ghir72180 TC31666Gossypium hirsutum (cotton (tetraploid)) 
lsat47444  interProLsa.3477Lactuca sativa (lettuce) 
ptri969 C_CF421329Poncirus trifoliata () 
pers8177 S_AJ872534Prunus persica (peach) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
aoff3326  interPro228256Asparagus officinalis (garden asparagus) 
soff1344 Sof.1370Saccharum officinarum (sugar cane) 
Species
Asparagus officinalis  Gossypium hirsutum  Lactuca sativa  Poncirus trifoliata  Prunus persica  Saccharum officinarum  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Asparagus officinalis (garden asparagus)  ( Select Species     Clear Species)
  aoff3326 2282562
Gossypium hirsutum (cotton (tetraploid))  ( Select Species     Clear Species)
  ghir72180 TC316661
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat47444 Lsa.34771
Poncirus trifoliata ()  ( Select Species     Clear Species)
  ptri969 C_CF4213291
Prunus persica (peach)  ( Select Species     Clear Species)
  pers8177 S_AJ8725341
Saccharum officinarum (sugar cane)  ( Select Species     Clear Species)
  soff1344 Sof.13702
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: lsat47444 LENGTH: 244 aa
IPR009053
Prefoldin
SSF46579 [137-227]T 0.0032 SSF46579 Prefoldin Prefoldin
IPR010935
SMCs flexible hinge
PF06470 [2-77]T 1.1e-17 PF06470 SMC_hinge SMC_hinge
no IPR
PTHR18937 [1-242]T 2.5e-91 PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
PTHR18937:SF12 [1-242]T 2.5e-91 PTHR18937:SF12 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1
SSF75553 [1-127]T 7.3e-26 SSF75553 Smc hinge domain Smc hinge domain

Subfamily ID: 2

SEQUENCE: aoff3326 LENGTH: 194 aa
no IPR
PTHR18937 [1-194]T 2.1e-57 PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
PTHR18937:SF12 [1-194]T 2.1e-57 PTHR18937:SF12 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1
SSF75553 [1-57]T 1.8e-07 SSF75553 Smc hinge domain Smc hinge domain
Subfamily
1  2  

Sub family ID: 1
IPR010935: SMCs flexible hinge
Cellular ComponentGO:0005694, chromosome
Molecular FunctionGO:0005515, protein binding
GO:0005524, ATP binding
 
Department of Biology | University of North Carolina at Chapel Hill
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