Search results for family: 17833, total 5 Unipeptides retrieved.


Related families 1 families found.
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Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

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Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
egui1369 S_CN599574Elaeis guineensis (african oil palm) 
pvir2260  interProC_DN148961Panicum virgatum (switchgrass) 
zmay64869 Zm.12297Zea mays (corn) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
osat173745 Os08g15050Oryza sativa (rice) 
osat190339  interPro5168.m00119 Protein sequence may be in errorOryza sativa (rice) 
Species
Elaeis guineensis  Oryza sativa  Panicum virgatum  Zea mays  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Elaeis guineensis (african oil palm)  ( Select Species     Clear Species)
  egui1369 S_CN5995741
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat173745 Os08g150502
  osat190339 5168.m00119 Protein sequence may be in error2
Panicum virgatum (switchgrass)  ( Select Species     Clear Species)
  pvir2260 C_DN1489611
Zea mays (corn)  ( Select Species     Clear Species)
  zmay64869 Zm.122971
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: pvir2260 LENGTH: 105 aa
IPR010402
CCT
PF06203 [16-54]T 3.5e-19 PF06203 CCT CCT
PS51017 [10-52]T 16.331 PS51017 CCT CCT

Subfamily ID: 2

SEQUENCE: osat190339 LENGTH: 124 aa
IPR000315
Zinc finger, B-box
PF00643 [14-58]T 4.5e-15 PF00643 zf-B_box zf-B_box
PS50119 [17-58]T 9.343 PS50119 ZF_BBOX ZF_BBOX
SM00336 [12-58]T 1.3e-09 SM00336 no description no description
IPR006058
2Fe-2S ferredoxin, iron-sulfur binding site
PS00197 [12-20]? NA PS00197 2FE2S_FER_1 2FE2S_FER_1
no IPR
SSF57845 [15-52]T 0.0004 SSF57845 B-box zinc-binding domain B-box zinc-binding domain
Subfamily
1  2  

Sub family ID: 2
IPR000315: Zn-finger, B-box
Cellular ComponentGO:0005622, intracellular
Molecular FunctionGO:0008270, zinc ion binding
IPR006058: 2Fe-2S ferredoxin, iron-sulfur binding site
Biological ProcessGO:0006118, electron transport
Molecular FunctionGO:0005489, electron transporter activity
 
Department of Biology | University of North Carolina at Chapel Hill
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