Search results for family: 1889, total 46 Unipeptides retrieved.


Related families 6 families found.
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Select Unipeptides in panel below to see alignment and detailed phylogeny
Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
atha83043 At1g60930Arabidopsis thaliana (thale cress) 
atha85137 At1g27880Arabidopsis thaliana (thale cress) 
atha89616 At3g05740Arabidopsis thaliana (thale cress) 
atha90732 At1g31360Arabidopsis thaliana (thale cress) 
atha91225 At1g10930Arabidopsis thaliana (thale cress) 
atha91265 At5g27680Arabidopsis thaliana (thale cress) 
atha94331 At4g35740Arabidopsis thaliana (thale cress) 
aoff1869  interPro228756Asparagus officinalis (garden asparagus) 
aoff3717 229101Asparagus officinalis (garden asparagus) 
bvul19467 CV301415Beta vulgaris (sugarbeet) 
bnap15598 Bna.2289Brassica napus (rapeseed) 
brap3136 C_BG543559Brassica rapa (field mustard) 
brap9767 C_BG543559.11kBrassica rapa (field mustard) 
cann20448 CA521724Capsicum annuum (pepper) 
hcen68 S_CB087325Hedyotis centranthoides () 
hvul58407 Hv.11887Hordeum vulgare (barley) 
lsat46760 Lsa.2777Lactuca sativa (lettuce) 
lsat47863 Lsa.3909Lactuca sativa (lettuce) 
lsat50387 Lsa.6512Lactuca sativa (lettuce) 
lsat50649 Lsa.6781Lactuca sativa (lettuce) 
mtru85252 TC104779Medicago truncatula (barrel medic) 
mtru97051 BE204048Medicago truncatula (barrel medic) 
osat132599 Os05g05810Oryza sativa (rice) 
osat136779 Os11g44910Oryza sativa (rice) 
osat142635 Os07g48360Oryza sativa (rice) 
osat143201 Os02g54020Oryza sativa (rice) 
osat157558 Os04g35420Oryza sativa (rice) 
osat158546 5276.m00136 Protein sequence may be in errorOryza sativa (rice) 
osat171593 6805.m00116 Protein sequence may be in errorOryza sativa (rice) 
osat181049 Os04g40970Oryza sativa (rice) 
osat212037 7264.m00062 Protein sequence may be in errorOryza sativa (rice) 
ptae46767 CO164283Pinus taeda (loblolly pine) 
pdel1509 C_CX177134Populus deltoides () 
peup6064 S_AJ770273Populus euphratica () 
ptrc15246 PUT-148a-Populus_trichocarpa_X_Populus_deltoides-14961Populus trichocarpa (western balsam poplar) 
rame1206 267135Ribes americanum () 
smil1211 S_CV162589Salvia miltiorrhiza (redroot sage) 
tmon3037 PUT-148a-Triticum_monococcum-4473Triticum monococcum (einkorn wheat) 
vcor89 294651Vaccinium corymbosum (American blueberry) 
wmir1465 348241Welwitschia mirabilis () 
zmay56923 Zm.26686Zea mays (corn) 
zmay73426 Zm.20649Zea mays (corn) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
acep12191  interProBI095771Allium cepa (onion) 
lsat50399 Lsa.6524Lactuca sativa (lettuce) 
pgin144 S_CN846077Panax ginseng (ginseng) 
ptae32696 TC62534Pinus taeda (loblolly pine) 
Species
Allium cepa  Arabidopsis thaliana  Asparagus officinalis  Beta vulgaris  Brassica napus  Brassica rapa  Capsicum annuum  Hedyotis centranthoides  Hordeum vulgare  Lactuca sativa  Medicago truncatula  Oryza sativa  Panax ginseng  Pinus taeda  Populus deltoides  Populus euphratica  Populus trichocarpa  Ribes americanum  Salvia miltiorrhiza  Triticum monococcum  Vaccinium corymbosum  Welwitschia mirabilis  Zea mays  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Allium cepa (onion)  ( Select Species     Clear Species)
  acep12191 BI0957712
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha83043 At1g609301
  atha85137 At1g278801
  atha89616 At3g057401
  atha90732 At1g313601
  atha91225 At1g109301
  atha91265 At5g276801
  atha94331 At4g357401
Asparagus officinalis (garden asparagus)  ( Select Species     Clear Species)
  aoff1869 2287561
  aoff3717 2291011
Beta vulgaris (sugarbeet)  ( Select Species     Clear Species)
  bvul19467 CV3014151
Brassica napus (rapeseed)  ( Select Species     Clear Species)
  bnap15598 Bna.22891
Brassica rapa (field mustard)  ( Select Species     Clear Species)
  brap3136 C_BG5435591
  brap9767 C_BG543559.11k1
Capsicum annuum (pepper)  ( Select Species     Clear Species)
  cann20448 CA5217241
Hedyotis centranthoides ()  ( Select Species     Clear Species)
  hcen68 S_CB0873251
Hordeum vulgare (barley)  ( Select Species     Clear Species)
  hvul58407 Hv.118871
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat46760 Lsa.27771
  lsat47863 Lsa.39091
  lsat50387 Lsa.65121
  lsat50399 Lsa.65242
  lsat50649 Lsa.67811
Medicago truncatula (barrel medic)  ( Select Species     Clear Species)
  mtru85252 TC1047791
  mtru97051 BE2040481
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat132599 Os05g058101
  osat136779 Os11g449101
  osat142635 Os07g483601
  osat143201 Os02g540201
  osat157558 Os04g354201
  osat158546 5276.m00136 Protein sequence may be in error1
  osat171593 6805.m00116 Protein sequence may be in error1
  osat181049 Os04g409701
  osat212037 7264.m00062 Protein sequence may be in error1
Panax ginseng (ginseng)  ( Select Species     Clear Species)
  pgin144 S_CN8460772
Pinus taeda (loblolly pine)  ( Select Species     Clear Species)
  ptae32696 TC625342
  ptae46767 CO1642831
Populus deltoides ()  ( Select Species     Clear Species)
  pdel1509 C_CX1771341
Populus euphratica ()  ( Select Species     Clear Species)
  peup6064 S_AJ7702731
Populus trichocarpa (western balsam poplar)  ( Select Species     Clear Species)
  ptrc15246 PUT-148a-Populus_trichocarpa_X_Populus_deltoides-149611
Ribes americanum ()  ( Select Species     Clear Species)
  rame1206 2671351
Salvia miltiorrhiza (redroot sage)  ( Select Species     Clear Species)
  smil1211 S_CV1625891
Triticum monococcum (einkorn wheat)  ( Select Species     Clear Species)
  tmon3037 PUT-148a-Triticum_monococcum-44731
Vaccinium corymbosum (American blueberry)  ( Select Species     Clear Species)
  vcor89 2946511
Welwitschia mirabilis ()  ( Select Species     Clear Species)
  wmir1465 3482411
Zea mays (corn)  ( Select Species     Clear Species)
  zmay56923 Zm.266861
  zmay73426 Zm.206491
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: aoff1869 LENGTH: 192 aa
IPR002464
ATP-dependent helicase, DEAH-box
PS00690 [110-119]T 8e-5 PS00690 DEAH_ATP_HELICASE DEAH_ATP_HELICASE
IPR004589
ATP-dependent DNA helicase RecQ
PTHR13710 [1-189]T 1e-97 PTHR13710 DNA HELICASE RECQ FAMILY MEMBER DNA HELICASE RECQ FAMILY MEMBER
IPR011545
DEAD/DEAH box helicase, N-terminal
PF00270 [4-161]T 8.2e-26 PF00270 DEAD DEAD
SM00487 [1-187]T 2.6e-15 SM00487 no description no description
no IPR
DOMAIN [40-192]T DOMAIN DOMAIN CYTOPLASMIC. DOMAIN CYTOPLASMIC.
SSF52540 [1-176]T 2.3e-25 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases
TRANSMEM [19-39]T TRANSMEM TRANSMEM TRANSMEM

Subfamily ID: 2

SEQUENCE: acep12191 LENGTH: 161 aa
IPR001650
Helicase, C-terminal
PF00271 [12-82]T 0.0023 PF00271 Helicase_C Helicase_C
IPR004589
ATP-dependent DNA helicase RecQ
PTHR13710 [20-161]T 1.5e-47 PTHR13710 DNA HELICASE RECQ FAMILY MEMBER DNA HELICASE RECQ FAMILY MEMBER
no IPR
PTHR13710:SF13 [20-161]T 1.5e-47 PTHR13710:SF13 DNA HELICASE HUS2 DNA HELICASE HUS2
SSF52540 [20-161]T 3.5e-14 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases
Subfamily
1  2  

Sub family ID: 1
IPR002464: ATP-dependent helicase, DEAH-box
Molecular FunctionGO:0003676, nucleic acid binding
GO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR004589: ATP-dependent DNA helicase RecQ
Biological ProcessGO:0006259, DNA metabolism
Molecular FunctionGO:0008026, ATP-dependent helicase activity
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Sub family ID: 2
IPR001650: Helicase, C-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
IPR004589: ATP-dependent DNA helicase RecQ
Biological ProcessGO:0006259, DNA metabolism
Molecular FunctionGO:0008026, ATP-dependent helicase activity
 
Department of Biology | University of North Carolina at Chapel Hill
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