Search results for family: 19671, total 4 Unipeptides retrieved.


Related families 1 families found.
Excluded Unipeptides View
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Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
bvul21131  interProBQ587850Beta vulgaris (sugarbeet) 
pgin1060 S_CN848063Panax ginseng (ginseng) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
hvul53476  interProHv.5766Hordeum vulgare (barley) 
taes125526 Ta.31916Triticum aestivum (bread wheat) 
Species
Beta vulgaris  Hordeum vulgare  Panax ginseng  Triticum aestivum  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Beta vulgaris (sugarbeet)  ( Select Species     Clear Species)
  bvul21131 BQ5878501
Hordeum vulgare (barley)  ( Select Species     Clear Species)
  hvul53476 Hv.57662
Panax ginseng (ginseng)  ( Select Species     Clear Species)
  pgin1060 S_CN8480631
Triticum aestivum (bread wheat)  ( Select Species     Clear Species)
  taes125526 Ta.319162
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: bvul21131 LENGTH: 148 aa
IPR000513
5'3'-Exonuclease N- and I-domain
PS50183 [84-141]T 12.564 PS50183 53EXO_I_DOMAIN 53EXO_I_DOMAIN
IPR002421
5'-3' exonuclease
PF02739 [2-147]T 6.2e-09 PF02739 5_3_exonuc_N 5_3_exonuc_N
no IPR
PTHR10133 [2-147]T 3.5e-21 PTHR10133 DNA POLYMERASE I DNA POLYMERASE I
PTHR10133:SF1 [2-147]T 3.5e-21 PTHR10133:SF1 DNA POLYMERASE I DNA POLYMERASE I
SSF88723 [1-147]T 1.2e-23 SSF88723 PIN domain-like PIN domain-like

Subfamily ID: 2

SEQUENCE: hvul53476 LENGTH: 198 aa
IPR000513
5'3'-Exonuclease N- and I-domain
PS50183 [87-141]T 13.229 PS50183 53EXO_I_DOMAIN 53EXO_I_DOMAIN
IPR002421
5'-3' exonuclease
PF02739 [89-143]T 4.1e-13 PF02739 5_3_exonuc_N 5_3_exonuc_N
SM00475 [14-192]T 0.0008 SM00475 no description no description
no IPR
PTHR10133 [15-187]T 7.5e-22 PTHR10133 DNA POLYMERASE I DNA POLYMERASE I
PTHR10133:SF1 [15-187]T 7.5e-22 PTHR10133:SF1 DNA POLYMERASE I DNA POLYMERASE I
SSF88723 [13-166]T 3.5e-20 SSF88723 PIN domain-like PIN domain-like
Subfamily
1  2  

Sub family ID: 1
IPR000513: 5'3'-Exonuclease N- and I-domain
Molecular FunctionGO:0003677, DNA binding
GO:0004518, nuclease activity
IPR002421: 5'-3' exonuclease
Molecular FunctionGO:0003677, DNA binding
GO:0008409, 5'-3' exonuclease activity
 
Sub family ID: 2
IPR000513: 5'3'-Exonuclease N- and I-domain
Molecular FunctionGO:0003677, DNA binding
GO:0004518, nuclease activity
IPR002421: 5'-3' exonuclease
Molecular FunctionGO:0003677, DNA binding
GO:0008409, 5'-3' exonuclease activity
 
Department of Biology | University of North Carolina at Chapel Hill
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