Search results for family: 2303, total 19 Unipeptides retrieved.


Related families 5 families found.
Excluded Unipeptides View
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Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
acep12809  interProTC2389Allium cepa (onion) 
atha108748 At3g54670Arabidopsis thaliana (thale cress) 
gsoj6139 PUT-148a-Glycine_soja-9425Glycine soja (wild soybean) 
hvul57958 Hv.6792Hordeum vulgare (barley) 
lsat47670 Lsa.3712Lactuca sativa (lettuce) 
lchi772 S_CN465990Leymus chinensis () 
mdom1014 Mdo.1308Malus x.domestica (apple) 
pame2634 211155Persea americana (avocado) 
ptae65391 TC76761Pinus taeda (loblolly pine) 
sorg45896 Sbi.8196Sorghum bicolor (sorghum) 
taes124219 Ta.7619Triticum aestivum (bread wheat) 
vvin24673 Vvi.1818Vitis vinifera (wine grape) 
zmay56675 Zm.13490Zea mays (corn) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
aame2668  interPro282476Acorus americanus (sweetflag) 
bvul20715 TC3671Beta vulgaris (sugarbeet) 
cann11167 BM062511Capsicum annuum (pepper) 
ghyb5913 329851Gerbera hybrid.cultivar () 
ltul3779 252191Liriodendron tulipifera () 
ppis1942 S_BX680304Pinus pinaster (maritime pine) 
Species
Acorus americanus  Allium cepa  Arabidopsis thaliana  Beta vulgaris  Capsicum annuum  Gerbera hybrid.cultivar  Glycine soja  Hordeum vulgare  Lactuca sativa  Leymus chinensis  Liriodendron tulipifera  Malus x.domestica  Persea americana  Pinus pinaster  Pinus taeda  Sorghum bicolor  Triticum aestivum  Vitis vinifera  Zea mays  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Acorus americanus (sweetflag)  ( Select Species     Clear Species)
  aame2668 2824762
Allium cepa (onion)  ( Select Species     Clear Species)
  acep12809 TC23891
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha108748 At3g546701
Beta vulgaris (sugarbeet)  ( Select Species     Clear Species)
  bvul20715 TC36712
Capsicum annuum (pepper)  ( Select Species     Clear Species)
  cann11167 BM0625112
Gerbera hybrid.cultivar ()  ( Select Species     Clear Species)
  ghyb5913 3298512
Glycine soja (wild soybean)  ( Select Species     Clear Species)
  gsoj6139 PUT-148a-Glycine_soja-94251
Hordeum vulgare (barley)  ( Select Species     Clear Species)
  hvul57958 Hv.67921
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat47670 Lsa.37121
Leymus chinensis ()  ( Select Species     Clear Species)
  lchi772 S_CN4659901
Liriodendron tulipifera ()  ( Select Species     Clear Species)
  ltul3779 2521912
Malus x.domestica (apple)  ( Select Species     Clear Species)
  mdom1014 Mdo.13081
Persea americana (avocado)  ( Select Species     Clear Species)
  pame2634 2111551
Pinus pinaster (maritime pine)  ( Select Species     Clear Species)
  ppis1942 S_BX6803042
Pinus taeda (loblolly pine)  ( Select Species     Clear Species)
  ptae65391 TC767611
Sorghum bicolor (sorghum)  ( Select Species     Clear Species)
  sorg45896 Sbi.81961
Triticum aestivum (bread wheat)  ( Select Species     Clear Species)
  taes124219 Ta.76191
Vitis vinifera (wine grape)  ( Select Species     Clear Species)
  vvin24673 Vvi.18181
Zea mays (corn)  ( Select Species     Clear Species)
  zmay56675 Zm.134901
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: acep12809 LENGTH: 402 aa
IPR003395
SMC protein, N-terminal
PF02463 [16-389]T 1.8e-11 PF02463 SMC_N SMC_N
IPR003439
ABC transporter related
PS00211 [295-309]? NA PS00211 ABC_TRANSPORTER_1 ABC_TRANSPORTER_1
PS50100 [295-366]T 9.711 PS50100 DA_BOX DA_BOX
no IPR
PTHR18937 [1-42]T 1.5e-153 PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER[76-400]T 1.5e-153 PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
PTHR18937:SF12 [1-42]T 1.5e-153 PTHR18937:SF12 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1[76-400]T 1.5e-153 PTHR18937:SF12 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1
SSF52540 [6-344]T 1.4e-12 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases

Subfamily ID: 2

SEQUENCE: aame2668 LENGTH: 215 aa
no IPR
PTHR18937 [1-12]T 6.5e-45 PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER[46-215]T 6.5e-45 PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
PTHR18937:SF12 [1-12]T 6.5e-45 PTHR18937:SF12 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1[46-215]T 6.5e-45 PTHR18937:SF12 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1
Subfamily
1  2  

Sub family ID: 1
IPR003395: SMC protein, N-terminal
Biological ProcessGO:0007059, chromosome segregation
Cellular ComponentGO:0005634, nucleus
GO:0005694, chromosome
Molecular FunctionGO:0005524, ATP binding
IPR003439: ABC transporter
Biological ProcessGO:0006810, transport
Cellular ComponentGO:0016020, membrane
Molecular FunctionGO:0004009, ATP-binding cassette (ABC) transporter activity
GO:0005524, ATP binding
GO:0016887, ATPase activity
 
Department of Biology | University of North Carolina at Chapel Hill
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