Search results for family: 3312, total 7 Unipeptides retrieved.


Related families 3 families found.
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Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
atha106316  interProAt5g07660Arabidopsis thaliana (thale cress) 
atha82801 At5g61460Arabidopsis thaliana (thale cress) 
lsat45995 Lsa.1981Lactuca sativa (lettuce) 
mtru89617 AW774067Medicago truncatula (barrel medic) 
shen4953 312688Saruma henryi () 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
palb6870  interProS_CF231618Populus alba (white poplar) 
palb8278 S_CF231618.11kPopulus alba (white poplar) 
Species
Arabidopsis thaliana  Lactuca sativa  Medicago truncatula  Populus alba  Saruma henryi  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha106316 At5g076601
  atha82801 At5g614601
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat45995 Lsa.19811
Medicago truncatula (barrel medic)  ( Select Species     Clear Species)
  mtru89617 AW7740671
Populus alba (white poplar)  ( Select Species     Clear Species)
  palb6870 S_CF2316182
  palb8278 S_CF231618.11k2
Saruma henryi ()  ( Select Species     Clear Species)
  shen4953 3126881
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: atha106316 LENGTH: 1058 aa
IPR003395
SMC protein, N-terminal
PF02463 [22-1050]T 1.1E-9 PF02463 SMC_N SMC_N
IPR003439
ABC transporter related
PS50100 [974-1043]T 8.896 PS50100 DA_BOX DA_BOX

Subfamily ID: 2

SEQUENCE: palb6870 LENGTH: 179 aa
no IPR
PTHR19306 [1-168]T 2.6e-71 PTHR19306 STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5, SMC6) STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5, SMC6)
PTHR19306:SF2 [1-168]T 2.6e-71 PTHR19306:SF2 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6 SMC6 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6 SMC6
SSF52540 [6-132]T 2.4e-06 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases
Subfamily
1  2  

Sub family ID: 1
IPR003395: SMC protein, N-terminal
Biological ProcessGO:0007059, chromosome segregation
Cellular ComponentGO:0005634, nucleus
GO:0005694, chromosome
Molecular FunctionGO:0005524, ATP binding
IPR003439: ABC transporter
Biological ProcessGO:0006810, transport
Cellular ComponentGO:0016020, membrane
Molecular FunctionGO:0004009, ATP-binding cassette (ABC) transporter activity
GO:0005524, ATP binding
GO:0016887, ATPase activity
 
Department of Biology | University of North Carolina at Chapel Hill
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