Search results for family: 3487, total 11 Unipeptides retrieved.


Related families 8 families found.
Excluded Unipeptides View
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Select Unipeptides in panel below to see alignment and detailed phylogeny
Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
hvul52542  interProHv.4594Hordeum vulgare (barley) 
nadv140 354229Nuphar advena () 
osat169339 4401.m00166 Protein sequence may be in errorOryza sativa (rice) 
shen975 307946Saruma henryi () 
wmir1119 347870Welwitschia mirabilis () 
zmay59607 Zm.10261Zea mays (corn) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
atha100285  interProAt3g47460Arabidopsis thaliana (thale cress) 
atha107061 At5g62410Arabidopsis thaliana (thale cress) 
gmax78843 Gma.12055Glycine max (soybean) 
lsat50846 Lsa.6987Lactuca sativa (lettuce) 
ptrc11714 PUT-148a-Populus_trichocarpa_X_Populus_deltoides-9207Populus trichocarpa (western balsam poplar) 
Species
Arabidopsis thaliana  Glycine max  Hordeum vulgare  Lactuca sativa  Nuphar advena  Oryza sativa  Populus trichocarpa  Saruma henryi  Welwitschia mirabilis  Zea mays  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha100285 At3g474602
  atha107061 At5g624102
Glycine max (soybean)  ( Select Species     Clear Species)
  gmax78843 Gma.120552
Hordeum vulgare (barley)  ( Select Species     Clear Species)
  hvul52542 Hv.45941
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat50846 Lsa.69872
Nuphar advena ()  ( Select Species     Clear Species)
  nadv140 3542291
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat169339 4401.m00166 Protein sequence may be in error1
Populus trichocarpa (western balsam poplar)  ( Select Species     Clear Species)
  ptrc11714 PUT-148a-Populus_trichocarpa_X_Populus_deltoides-92072
Saruma henryi ()  ( Select Species     Clear Species)
  shen975 3079461
Welwitschia mirabilis ()  ( Select Species     Clear Species)
  wmir1119 3478701
Zea mays (corn)  ( Select Species     Clear Species)
  zmay59607 Zm.102611
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: hvul52542 LENGTH: 152 aa
IPR003395
SMC protein, N-terminal
PF02463 [2-142]T 6e-13 PF02463 SMC_N SMC_N
IPR003439
ABC transporter related
PS00211 [60-74]? NA PS00211 ABC_TRANSPORTER_1 ABC_TRANSPORTER_1
PS50100 [60-134]T 11.086 PS50100 DA_BOX DA_BOX
no IPR
DOMAIN [1-66]T DOMAIN DOMAIN CYTOPLASMIC. DOMAIN CYTOPLASMIC.
PTHR18937 [1-152]T 2.4e-117 PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
PTHR18937:SF9 [1-152]T 2.4e-117 PTHR18937:SF9 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC2 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC2
SSF52540 [28-134]T 2.1e-15 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases
TRANSMEM [67-87]T TRANSMEM TRANSMEM TRANSMEM

Subfamily ID: 2

SEQUENCE: atha100285 LENGTH: 1171 aa
IPR003395
SMC protein, N-terminal
PF02463 [2-1162]T 3.0999999999999998E-108 PF02463 SMC_N SMC_N
IPR003439
ABC transporter related
PD000006 [1079-1122]T 2.0E-8 PD000006 ABC_transporter ABC_transporter
PS00211 [1080-1094]? 0.0 PS00211 ABC_TRANSPORTER_1 ABC_TRANSPORTER_1
PS50100 [1080-1154]T 11.34 PS50100 DA_BOX DA_BOX
IPR010935
SMCs flexible hinge
PF06470 [517-635]T 1.5E-27 PF06470 SMC_hinge SMC_hinge
no IPR
DOMAIN [1108-1171]T DOMAIN DOMAIN CYTOPLASMIC. DOMAIN CYTOPLASMIC.
TRANSMEM [1087-1107]T TRANSMEM TRANSMEM TRANSMEM
Subfamily
1  2  

Sub family ID: 0
IPR003395: SMC protein, N-terminal
Biological ProcessGO:0007059, chromosome segregation
Cellular ComponentGO:0005634, nucleus
GO:0005694, chromosome
Molecular FunctionGO:0005524, ATP binding
IPR003439: ABC transporter
Biological ProcessGO:0006810, transport
Cellular ComponentGO:0016020, membrane
Molecular FunctionGO:0004009, ATP-binding cassette (ABC) transporter activity
GO:0005524, ATP binding
GO:0016887, ATPase activity
 
Sub family ID: 1
IPR003395: SMC protein, N-terminal
Biological ProcessGO:0007059, chromosome segregation
Cellular ComponentGO:0005634, nucleus
GO:0005694, chromosome
Molecular FunctionGO:0005524, ATP binding
IPR003439: ABC transporter
Biological ProcessGO:0006810, transport
Cellular ComponentGO:0016020, membrane
Molecular FunctionGO:0004009, ATP-binding cassette (ABC) transporter activity
GO:0005524, ATP binding
GO:0016887, ATPase activity
 
Sub family ID: 2
IPR003395: SMC protein, N-terminal
Biological ProcessGO:0007059, chromosome segregation
Cellular ComponentGO:0005634, nucleus
GO:0005694, chromosome
Molecular FunctionGO:0005524, ATP binding
IPR003439: ABC transporter
Biological ProcessGO:0006810, transport
Cellular ComponentGO:0016020, membrane
Molecular FunctionGO:0004009, ATP-binding cassette (ABC) transporter activity
GO:0005524, ATP binding
GO:0016887, ATPase activity
IPR010935: SMCs flexible hinge
Cellular ComponentGO:0005694, chromosome
Molecular FunctionGO:0005515, protein binding
GO:0005524, ATP binding
 
Department of Biology | University of North Carolina at Chapel Hill
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