Search results for family: 4405, total 5 Unipeptides retrieved.


Related families 2 families found.
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Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
osat145855  interPro4901.m00111 Protein sequence may be in errorOryza sativa (rice) 
osat165251 Os02g30800Oryza sativa (rice) 
osat175873 4866.m00083 Protein sequence may be in errorOryza sativa (rice) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
atha104230  interProAt1g08260Arabidopsis thaliana (thale cress) 
atha94362 At2g27120Arabidopsis thaliana (thale cress) 
Species
Arabidopsis thaliana  Oryza sativa  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha104230 At1g082602
  atha94362 At2g271202
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat145855 4901.m00111 Protein sequence may be in error1
  osat165251 Os02g308001
  osat175873 4866.m00083 Protein sequence may be in error1
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: osat145855 LENGTH: 1282 aa
IPR000943
Sigma-70 factor
PS00716 [1060-1086]? NA PS00716 SIGMA70_2 SIGMA70_2
no IPR
PF08490 [617-996]T 2.1e-218 PF08490 DUF1744 DUF1744
PTHR10670 [45-1276]T 0 PTHR10670 DNA POLYMERASE EPSILON, CATALYTIC SUBUNIT DNA POLYMERASE EPSILON, CATALYTIC SUBUNIT
SSF56672 [45-256]T 3.9e-30 SSF56672 DNA/RNA polymerases DNA/RNA polymerases

Subfamily ID: 2

SEQUENCE: atha104230 LENGTH: 2271 aa
IPR001917
Aminotransferase, class-II
PS00599 [1030-1039]? 0.0 PS00599 AA_TRANSFER_CLASS_2 AA_TRANSFER_CLASS_2
IPR006133
DNA polymerase B, exonuclease
PF03104 [72-403]T 4.1999999999999996E-129 PF03104 DNA_pol_B_exo DNA_pol_B_exo
IPR006134
DNA polymerase B region
PF00136 [472-1171]T 2.9E-5 PF00136 DNA_pol_B DNA_pol_B
IPR006172
DNA-directed DNA polymerase B
SM00486 [239-842]T 5.5000000000000006E-64 SM00486 POLBc POLBc
no IPR
DOMAIN [465-988]T DOMAIN DOMAIN CYTOPLASMIC. DOMAIN CYTOPLASMIC.
TRANSMEM [443-464]T TRANSMEM TRANSMEM [989-1009]T TRANSMEM TRANSMEM TRANSMEM
Subfamily
1  2  

Sub family ID: 1
IPR000943: Sigma-70 factor
Biological ProcessGO:0006352, transcription initiation
GO:0006355, regulation of transcription, DNA-dependent
Molecular FunctionGO:0003677, DNA binding
GO:0003700, transcription factor activity
GO:0016987, sigma factor activity
 
Sub family ID: 2
IPR001917: Aminotransferase, class-II
Biological ProcessGO:0008152, metabolism
Molecular FunctionGO:0016740, transferase activity
IPR006133: DNA polymerase B, exonuclease
Biological ProcessGO:0006260, DNA replication
Molecular FunctionGO:0003887, DNA-directed DNA polymerase activity
GO:0008408, 3'-5' exonuclease activity
IPR006134: DNA polymerase B region
Biological ProcessGO:0006260, DNA replication
Molecular FunctionGO:0000166, nucleotide binding
GO:0003677, DNA binding
GO:0003887, DNA-directed DNA polymerase activity
IPR006172: DNA-directed DNA polymerase B
Biological ProcessGO:0006260, DNA replication
Molecular FunctionGO:0000166, nucleotide binding
GO:0003677, DNA binding
GO:0003887, DNA-directed DNA polymerase activity
GO:0008408, 3'-5' exonuclease activity
 
Department of Biology | University of North Carolina at Chapel Hill
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