Search results for family: 4474, total 13 Unipeptides retrieved.


Related families 6 families found.
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Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
atha93408  interProAt3g03710Arabidopsis thaliana (thale cress) 
bvul22677 BI543475Beta vulgaris (sugarbeet) 
ltul3953 252430Liriodendron tulipifera () 
lesc65253 Les.9499Lycopersicon esculentum (tomato) 
osat135036 7462.m00182 Protein sequence may be in errorOryza sativa (rice) 
pvul6489 PUT-148a-Phaseolus_vulgaris-8318Phaseolus vulgaris (common bean) 
ptrc8588 PUT-148a-Populus_trichocarpa-18896Populus trichocarpa (western balsam poplar) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
acep11957  interProCF436147Allium cepa (onion) 
atha97684 At5g14580Arabidopsis thaliana (thale cress) 
lsat47792 Lsa.3837Lactuca sativa (lettuce) 
osat155516 2433.m00220 Protein sequence may be in errorOryza sativa (rice) 
ptae56232 DR692168Pinus taeda (loblolly pine) 
ptri6754 S_CX546004Poncirus trifoliata () 
Species
Allium cepa  Arabidopsis thaliana  Beta vulgaris  Lactuca sativa  Liriodendron tulipifera  Lycopersicon esculentum  Oryza sativa  Phaseolus vulgaris  Pinus taeda  Poncirus trifoliata  Populus trichocarpa  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Allium cepa (onion)  ( Select Species     Clear Species)
  acep11957 CF4361472
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha93408 At3g037101
  atha97684 At5g145802
Beta vulgaris (sugarbeet)  ( Select Species     Clear Species)
  bvul22677 BI5434751
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat47792 Lsa.38372
Liriodendron tulipifera ()  ( Select Species     Clear Species)
  ltul3953 2524301
Lycopersicon esculentum (tomato)  ( Select Species     Clear Species)
  lesc65253 Les.94991
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat135036 7462.m00182 Protein sequence may be in error1
  osat155516 2433.m00220 Protein sequence may be in error2
Phaseolus vulgaris (common bean)  ( Select Species     Clear Species)
  pvul6489 PUT-148a-Phaseolus_vulgaris-83181
Pinus taeda (loblolly pine)  ( Select Species     Clear Species)
  ptae56232 DR6921682
Poncirus trifoliata ()  ( Select Species     Clear Species)
  ptri6754 S_CX5460042
Populus trichocarpa (western balsam poplar)  ( Select Species     Clear Species)
  ptrc8588 PUT-148a-Populus_trichocarpa-188961
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: atha93408 LENGTH: 922 aa
IPR001247
Exoribonuclease
PF01138 [95-227]T 4.4000000000000004E-35 PF01138 RNase_PH[455-589]T 4.4E-50 PF01138 RNase_PH RNase_PH
PF03725 [230-294]T 3.3E-12 PF03725 RNase_PH_C[592-668]T 4.1E-18 PF03725 RNase_PH_C RNase_PH_C
PF03726 [325-452]T 3.4E-6 PF03726 PNPase PNPase
SSF46915 [322-371]T 8.31E-7 SSF46915 3_ExoRNase[422-453]T 8.31E-7 SSF46915 3_ExoRNase 3_ExoRNase
SSF55666 [230-321]T 9.67E-18 SSF55666 3_ExoRNase[591-693]T 2.11E-20 SSF55666 3_ExoRNase 3_ExoRNase
IPR003029
RNA binding S1
PF00575 [758-831]T 5.6E-11 PF00575 S1 S1
PS50126 [762-831]T 18.784 PS50126 S1 S1
SM00316 [760-831]T 3.5E-21 SM00316 S1 S1
IPR004087
KH
SM00322 [691-757]T 2.8E-5 SM00322 KH KH
IPR004088
KH, type 1
PF00013 [694-752]T 1.6E-8 PF00013 KH_1 KH_1
PS50084 [692-752]T 11.049 PS50084 KH_TYPE_1 KH_TYPE_1
IPR008994
Nucleic acid-binding, OB-fold
SSF50249 [779-832]T 0.134 SSF50249 Nucleic_acid_OB Nucleic_acid_OB

Subfamily ID: 2

SEQUENCE: acep11957 LENGTH: 205 aa
IPR001247
Exoribonuclease
PF01138 [1-64]T 4.5e-17 PF01138 RNase_PH RNase_PH
PF03725 [67-144]T 2.3e-16 PF03725 RNase_PH_C RNase_PH_C
SSF55666 [63-165]T 4.2e-25 SSF55666 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
no IPR
PTHR11252 [2-204]T 6.1e-86 PTHR11252 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
SSF54211 [1-62]T 3e-16 SSF54211 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
SSF54791 [167-205]T 0.0028 SSF54791 Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I)
Subfamily
1  2  

Sub family ID: 0
IPR001247: 3' exoribonuclease
Biological ProcessGO:0006396, RNA processing
Molecular FunctionGO:0000175, 3'-5'-exoribonuclease activity
GO:0003723, RNA binding
 
Sub family ID: 1
IPR001247: 3' exoribonuclease
Biological ProcessGO:0006396, RNA processing
Molecular FunctionGO:0000175, 3'-5'-exoribonuclease activity
GO:0003723, RNA binding
IPR003029: RNA binding S1
Molecular FunctionGO:0003723, RNA binding
IPR004087: KH
Molecular FunctionGO:0003676, nucleic acid binding
IPR004088: KH, type 1
Molecular FunctionGO:0003676, nucleic acid binding
IPR008994: Nucleic acid-binding OB-fold
Molecular FunctionGO:0003676, nucleic acid binding
 
Sub family ID: 2
IPR001247: 3' exoribonuclease
Biological ProcessGO:0006396, RNA processing
Molecular FunctionGO:0000175, 3'-5'-exoribonuclease activity
GO:0003723, RNA binding
 
Department of Biology | University of North Carolina at Chapel Hill
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