Search results for family: 5392, total 16 Unipeptides retrieved.


Related families 8 families found.
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Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
atri8522 199174Amborella trichopoda (amborella) 
atha86263  interProAt1g54440Arabidopsis thaliana (thale cress) 
atha98681 At5g35910Arabidopsis thaliana (thale cress) 
msat104 S_CO514590Medicago sativa (alfalfa) 
mtru90602 TC108148Medicago truncatula (barrel medic) 
mgut2091 MgU5181Mimulus guttatus (spotted monkey flower) 
osat131395 Os03g06190Oryza sativa (rice) 
osat187912 Os10g30100Oryza sativa (rice) 
ptae49496 TC63421Pinus taeda (loblolly pine) 
pers7508 S_BU040435Prunus persica (peach) 
shen3799 311296Saruma henryi () 
stub44504 Stu.13845Solanum tuberosum (potato) 
sorg45685 Sbi.7966Sorghum bicolor (sorghum) 
taes151377 Ta.32422Triticum aestivum (bread wheat) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
atha81059  interProAt2g32415Arabidopsis thaliana (thale cress) 
eesu628 S_BE056330Euphorbia esula (leafy spurge) 
Species
Amborella trichopoda  Arabidopsis thaliana  Euphorbia esula  Medicago sativa  Medicago truncatula  Mimulus guttatus  Oryza sativa  Pinus taeda  Prunus persica  Saruma henryi  Solanum tuberosum  Sorghum bicolor  Triticum aestivum  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Amborella trichopoda (amborella)  ( Select Species     Clear Species)
  atri8522 1991741
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha81059 At2g324152
  atha86263 At1g544401
  atha98681 At5g359101
Euphorbia esula (leafy spurge)  ( Select Species     Clear Species)
  eesu628 S_BE0563302
Medicago sativa (alfalfa)  ( Select Species     Clear Species)
  msat104 S_CO5145901
Medicago truncatula (barrel medic)  ( Select Species     Clear Species)
  mtru90602 TC1081481
Mimulus guttatus (spotted monkey flower)  ( Select Species     Clear Species)
  mgut2091 MgU51811
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat131395 Os03g061901
  osat187912 Os10g301001
Pinus taeda (loblolly pine)  ( Select Species     Clear Species)
  ptae49496 TC634211
Prunus persica (peach)  ( Select Species     Clear Species)
  pers7508 S_BU0404351
Saruma henryi ()  ( Select Species     Clear Species)
  shen3799 3112961
Solanum tuberosum (potato)  ( Select Species     Clear Species)
  stub44504 Stu.138451
Sorghum bicolor (sorghum)  ( Select Species     Clear Species)
  sorg45685 Sbi.79661
Triticum aestivum (bread wheat)  ( Select Species     Clear Species)
  taes151377 Ta.324221
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: atha86263 LENGTH: 738 aa
IPR002121
HRDC
PF00570 [435-513]T 1.3e-24 PF00570 HRDC HRDC
PS50967 [435-515]T 17.415 PS50967 HRDC HRDC
SM00341 [435-515]T 3.1e-06 SM00341 no description no description
IPR002562
3'-5' exonuclease
PF01612 [228-397]T 3.4e-63 PF01612 3_5_exonuc 3_5_exonuc
SM00474 [228-397]T 1.8e-47 SM00474 no description no description
IPR012337
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098 [230-399]T 5.3e-38 SSF53098 Ribonuclease H-like Ribonuclease H-like
no IPR
PTHR12124 [189-539]T 1e-162 PTHR12124 POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED
PTHR12124:SF2 [189-539]T 1e-162 PTHR12124:SF2 POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED

Subfamily ID: 2

SEQUENCE: atha81059 LENGTH: 880 aa
IPR002121
HRDC
PF00570 [352-400]T 9.6e-08 PF00570 HRDC HRDC
IPR002562
3'-5' exonuclease
PF01612 [119-287]T 8.2e-79 PF01612 3_5_exonuc 3_5_exonuc
SM00474 [119-287]T 1.1e-41 SM00474 no description no description
IPR012337
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098 [121-289]T 9.3e-36 SSF53098 Ribonuclease H-like Ribonuclease H-like
no IPR
DOMAIN [26-880]T DOMAIN DOMAIN CYTOPLASMIC. DOMAIN CYTOPLASMIC.
PTHR12124 [79-399]T 2.2e-107 PTHR12124 POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED
PTHR12124:SF2 [79-399]T 2.2e-107 PTHR12124:SF2 POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED
TRANSMEM [6-25]T TRANSMEM TRANSMEM TRANSMEM
Subfamily
1  2  

Sub family ID: 1
IPR002121: HRDC
Cellular ComponentGO:0005622, intracellular
Molecular FunctionGO:0003676, nucleic acid binding
IPR002562: 3'-5' exonuclease
Cellular ComponentGO:0005622, intracellular
Molecular FunctionGO:0003676, nucleic acid binding
GO:0008408, 3'-5' exonuclease activity
 
Sub family ID: 2
IPR002121: HRDC
Cellular ComponentGO:0005622, intracellular
Molecular FunctionGO:0003676, nucleic acid binding
IPR002562: 3'-5' exonuclease
Cellular ComponentGO:0005622, intracellular
Molecular FunctionGO:0003676, nucleic acid binding
GO:0008408, 3'-5' exonuclease activity
 
Department of Biology | University of North Carolina at Chapel Hill
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