Search results for family: 5440, total 5 Unipeptides retrieved.


Related families 2 families found.
Excluded Unipeptides View
Thumbnail sketch of subfamilies
 no tree available
Select Unipeptides in panel below to see alignment and detailed phylogeny
Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

View results sorted by

Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
atha89297  interProAt3g47390Arabidopsis thaliana (thale cress) 
mtru73375 TC112167Medicago truncatula (barrel medic) 
ptri4570 S_CD575587Poncirus trifoliata () 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
osat179930  interPro4359.m00153 Protein sequence may be in errorOryza sativa (rice) 
taes142318 Ta.27572Triticum aestivum (bread wheat) 
Species
Arabidopsis thaliana  Medicago truncatula  Oryza sativa  Poncirus trifoliata  Triticum aestivum  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha89297 At3g473901
Medicago truncatula (barrel medic)  ( Select Species     Clear Species)
  mtru73375 TC1121671
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat179930 4359.m00153 Protein sequence may be in error2
Poncirus trifoliata ()  ( Select Species     Clear Species)
  ptri4570 S_CD5755871
Triticum aestivum (bread wheat)  ( Select Species     Clear Species)
  taes142318 Ta.275722
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: atha89297 LENGTH: 599 aa
IPR002125
CMP/dCMP deaminase, zinc-binding
PF00383 [29-129]T 9.5E-5 PF00383 dCMP_cyt_deam_1 dCMP_cyt_deam_1
IPR002734
Bacterial bifunctional deaminase-reductase, C-terminal
PF01872 [186-391]T 9.999999999999998E-53 PF01872 RibD_C RibD_C
IPR004794
Riboflavin biosynthesis protein RibD
TIGR00326 [36-392]T 228.44 TIGR00326 eubact_ribD eubact_ribD
IPR011549
Riboflavin-specific deaminase, C-terminal
TIGR00227 [184-395]T 190.99 TIGR00227 ribD_Cterm ribD_Cterm
IPR012816
Conserved hypothetical protein CHP02464
TIGR02464 [426-586]T 143.68 TIGR02464 ribofla_fusion ribofla_fusion

Subfamily ID: 2

SEQUENCE: osat179930 LENGTH: 539 aa
IPR002125
CMP/dCMP deaminase, zinc-binding
PF00383 [51-149]T 0.001 PF00383 dCMP_cyt_deam_1 dCMP_cyt_deam_1
IPR002734
Bacterial bifunctional deaminase-reductase, C-terminal
PF01872 [169-337]T 2.1e-11 PF01872 RibD_C RibD_C
IPR012816
Conserved hypothetical protein CHP02464
TIGR02464 [372-536]T 5.2e-68 TIGR02464 ribofla_fusion: conserved hypothetical ribofla_fusion: conserved hypothetical
no IPR
PTHR11079 [53-327]T 4.6e-31 PTHR11079 CYTOSINE DEAMINASE CYTOSINE DEAMINASE
PTHR11079:SF10 [53-327]T 4.6e-31 PTHR11079:SF10 RIBOFLAVIN-SPECIFIC DEAMINASE RIBOFLAVIN-SPECIFIC DEAMINASE
SSF53597 [169-343]T 9.1e-10 SSF53597 Dihydrofolate reductases Dihydrofolate reductases
SSF53927 [50-132]T 1.6e-06 SSF53927 Cytidine deaminase-like Cytidine deaminase-like
Subfamily
1  2  

Sub family ID: 1
IPR002125: Cytidine/deoxycytidylate deaminase, zinc-binding region
Molecular FunctionGO:0008270, zinc ion binding
GO:0016787, hydrolase activity
IPR002734: Bacterial bifunctional deaminase-reductase, C-terminal
Biological ProcessGO:0009231, vitamin B2 biosynthesis
Molecular FunctionGO:0008703, 5-amino-6-(5-phosphoribosylamino)uracil reductase activity
IPR004794: Riboflavin biosynthesis protein RibD
Biological ProcessGO:0009231, vitamin B2 biosynthesis
Molecular FunctionGO:0008703, 5-amino-6-(5-phosphoribosylamino)uracil reductase activity
GO:0008835, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity
IPR011549: Riboflavin-specific deaminase, C-terminal
Biological ProcessGO:0009231, vitamin B2 biosynthesis
Molecular FunctionGO:0008703, 5-amino-6-(5-phosphoribosylamino)uracil reductase activity
GO:0050661, NADPH binding
 
Sub family ID: 2
IPR002125: Cytidine/deoxycytidylate deaminase, zinc-binding region
Molecular FunctionGO:0008270, zinc ion binding
GO:0016787, hydrolase activity
IPR002734: Bacterial bifunctional deaminase-reductase, C-terminal
Biological ProcessGO:0009231, vitamin B2 biosynthesis
Molecular FunctionGO:0008703, 5-amino-6-(5-phosphoribosylamino)uracil reductase activity
 
Department of Biology | University of North Carolina at Chapel Hill
Comments / Questions