Search results for family: 6322, total 8 Unipeptides retrieved.


Related families 4 families found.
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Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

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Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
atha79271  interProAt5g05660Arabidopsis thaliana (thale cress) 
ghyb2724 325552Gerbera hybrid.cultivar () 
mtru81486 TC99566Medicago truncatula (barrel medic) 
nben8792 TC10289Nicotiana benthamiana (wild tobacco) 
osat181299 2737.m00087 Protein sequence may be in errorOryza sativa (rice) 
osat196142 Os01g06550Oryza sativa (rice) 
zmay57906 Zm.23101Zea mays (corn) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
mtru73523  interProCX531466Medicago truncatula (barrel medic) 
Species
Arabidopsis thaliana  Gerbera hybrid.cultivar  Medicago truncatula  Nicotiana benthamiana  Oryza sativa  Zea mays  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha79271 At5g056601
Gerbera hybrid.cultivar ()  ( Select Species     Clear Species)
  ghyb2724 3255521
Medicago truncatula (barrel medic)  ( Select Species     Clear Species)
  mtru73523 CX5314662
  mtru81486 TC995661
Nicotiana benthamiana (wild tobacco)  ( Select Species     Clear Species)
  nben8792 TC102891
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat181299 2737.m00087 Protein sequence may be in error1
  osat196142 Os01g065501
Zea mays (corn)  ( Select Species     Clear Species)
  zmay57906 Zm.231011
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: atha79271 LENGTH: 912 aa
IPR000967
Zinc finger, NF-X1-type
PF01422 [198-216]T 0.11 PF01422 zf-NF-X1[250-269]T 8e-05 PF01422 zf-NF-X1[303-322]T 0.025 PF01422 zf-NF-X1[357-377]T 0.00042 PF01422 zf-NF-X1[410-429]T 0.022 PF01422 zf-NF-X1[437-456]T 0.00082 PF01422 zf-NF-X1[646-664]T 0.42 PF01422 zf-NF-X1[709-730]T 0.61 PF01422 zf-NF-X1 zf-NF-X1
IPR001965
Zinc finger, PHD-type
PS01359 [87-151]? NA PS01359 ZF_PHD_1 ZF_PHD_1
IPR006058
2Fe-2S ferredoxin, iron-sulfur binding site
PS00197 [206-214]? NA PS00197 2FE2S_FER_1[312-320]? NA PS00197 2FE2S_FER_1 2FE2S_FER_1
no IPR
DOMAIN [764-867]T DOMAIN DOMAIN CYTOPLASMIC. DOMAIN CYTOPLASMIC.
PTHR12360 [66-474]T 2.9e-162 PTHR12360 NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1)[572-883]T 2.9e-162 PTHR12360 NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1) NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1)
SM00438 [198-216]T 8.1 SM00438 no description[250-269]T 0.00035 SM00438 no description[303-322]T 0.05 SM00438 no description[357-377]T 0.035 SM00438 no description[410-429]T 0.33 SM00438 no description[437-456]T 0.0034 SM00438 no description[494-515]T 76 SM00438 no description[523-568]T 2.2e+02 SM00438 no description[605-636]T 33 SM00438 no description[646-664]T 0.41 SM00438 no description[709-730]T 32 SM00438 no description no description
SSF57850 [82-167]T 3.9e-10 SSF57850 RING/U-box RING/U-box
TRANSMEM [740-763]T TRANSMEM TRANSMEM [868-886]T TRANSMEM TRANSMEM TRANSMEM

Subfamily ID: 2

SEQUENCE: mtru73523 LENGTH: 166 aa
IPR001841
Zinc finger, RING-type
PS50089 [9-65]T 9.362 PS50089 ZF_RING_2 ZF_RING_2
IPR001965
Zinc finger, PHD-type
PS01359 [9-64]? NA PS01359 ZF_PHD_1 ZF_PHD_1
PS50016 [6-67]T 8.716 PS50016 ZF_PHD_2 ZF_PHD_2
no IPR
PTHR12360 [1-162]T 3.9e-56 PTHR12360 NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1) NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1)
SSF57850 [4-72]T 3.3e-09 SSF57850 RING/U-box RING/U-box
Subfamily
1  2  

Sub family ID: 0
IPR000967: Zn-finger, NF-X1 type
Biological ProcessGO:0006355, regulation of transcription, DNA-dependent
Cellular ComponentGO:0005634, nucleus
Molecular FunctionGO:0003700, transcription factor activity
 
Sub family ID: 1
IPR000967: Zn-finger, NF-X1 type
Biological ProcessGO:0006355, regulation of transcription, DNA-dependent
Cellular ComponentGO:0005634, nucleus
Molecular FunctionGO:0003700, transcription factor activity
IPR001965: Zn-finger-like, PHD finger
Biological ProcessGO:0006355, regulation of transcription, DNA-dependent
Molecular FunctionGO:0003677, DNA binding
GO:0005515, protein binding
GO:0008270, zinc ion binding
IPR006058: 2Fe-2S ferredoxin, iron-sulfur binding site
Biological ProcessGO:0006118, electron transport
Molecular FunctionGO:0005489, electron transporter activity
 
Sub family ID: 2
IPR001841: Zn-finger, RING
Biological ProcessGO:0016567, protein ubiquitination
Cellular ComponentGO:0000151, ubiquitin ligase complex
Molecular FunctionGO:0004842, ubiquitin-protein ligase activity
GO:0008270, zinc ion binding
IPR001965: Zn-finger-like, PHD finger
Biological ProcessGO:0006355, regulation of transcription, DNA-dependent
Molecular FunctionGO:0003677, DNA binding
GO:0005515, protein binding
GO:0008270, zinc ion binding
 
Department of Biology | University of North Carolina at Chapel Hill
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