Search results for family: 649, total 48 Unipeptides retrieved.


Related families 21 families found.
Excluded Unipeptides View
Thumbnail sketch of subfamilies
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Select Unipeptides in panel below to see alignment and detailed phylogeny
Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
acep12296  interProCF449575Allium cepa (onion) 
acep13681 CF440993Allium cepa (onion) 
acep14300 CF436731Allium cepa (onion) 
atri9247 200166Amborella trichopoda (amborella) 
amaj3999 S_AJ795837Antirrhinum majus (snapdragon) 
atha105861 At2g35920Arabidopsis thaliana (thale cress) 
atha81913 At2g01130Arabidopsis thaliana (thale cress) 
atha92704 At5g04895Arabidopsis thaliana (thale cress) 
atha93303 At1g58050Arabidopsis thaliana (thale cress) 
atha97928 At1g58060Arabidopsis thaliana (thale cress) 
bvul14974 TC1623Beta vulgaris (sugarbeet) 
bvul19013 TC1134Beta vulgaris (sugarbeet) 
cann16490 CA525806Capsicum annuum (pepper) 
ccle4143 PUT-148a-Citrus_clementina-6101Citrus clementina () 
ecal7738 38456Eschscholzia californica (california poppy) 
garb2860 S_BM358453Gossypium arboreum (tree cotton) 
garb9510 S_BE053130Gossypium arboreum (tree cotton) 
ghir67468 BM358453Gossypium hirsutum (cotton (tetraploid)) 
ghir71006 BE053130Gossypium hirsutum (cotton (tetraploid)) 
hvul57253 Hv.10956Hordeum vulgare (barley) 
lsat47221 Lsa.3248Lactuca sativa (lettuce) 
lsat49357 Lsa.5455Lactuca sativa (lettuce) 
lsat49519 Lsa.5621Lactuca sativa (lettuce) 
lesc67345 Les.8216Lycopersicon esculentum (tomato) 
mesc922 C_CK649799Manihot esculenta (cassava) 
mtru72542 TC105498Medicago truncatula (barrel medic) 
mcry15697 CA839843Mesembryanthemum crystallinum (iceplant) 
mcry20804 BE131419Mesembryanthemum crystallinum (iceplant) 
osat138192 Os04g35260Oryza sativa (rice) 
osat177228 33.m00101 Protein sequence may be in errorOryza sativa (rice) 
osat182276 Os03g53760Oryza sativa (rice) 
osat188159 Os10g33280Oryza sativa (rice) 
pvul8315 PUT-148a-Phaseolus_vulgaris-4510124Phaseolus vulgaris (common bean) 
ptae40911 TC80229Pinus taeda (loblolly pine) 
ptae59501 TC79160Pinus taeda (loblolly pine) 
peur738 S_CX180628Populus euramericana () 
ptrc7456 PUT-148a-Populus_trichocarpa-11421217Populus trichocarpa (western balsam poplar) 
parm1308 C_CV045335Prunus armeniaca (apricot) 
pdul1005 S_BU574903Prunus dulcis (almond) 
pdul325 S_BU573070Prunus dulcis (almond) 
taes125284 Ta.35146Triticum aestivum (bread wheat) 
taes127948 Ta.13282Triticum aestivum (bread wheat) 
zmay59823 Zm.25057Zea mays (corn) 
zmay68249 Zm.23569Zea mays (corn) 
zele14513 PUT-148a-Zinnia_elegans-10947Zinnia elegans (zinnia) 
zele8445 PUT-148a-Zinnia_elegans-756Zinnia elegans (zinnia) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
atha97581  interProAt2g47680Arabidopsis thaliana (thale cress) 
peup5348 S_AJ773853Populus euphratica () 
Species
Allium cepa  Amborella trichopoda  Antirrhinum majus  Arabidopsis thaliana  Beta vulgaris  Capsicum annuum  Citrus clementina  Eschscholzia californica  Gossypium arboreum  Gossypium hirsutum  Hordeum vulgare  Lactuca sativa  Lycopersicon esculentum  Manihot esculenta  Medicago truncatula  Mesembryanthemum crystallinum  Oryza sativa  Phaseolus vulgaris  Pinus taeda  Populus euphratica  Populus euramericana  Populus trichocarpa  Prunus armeniaca  Prunus dulcis  Triticum aestivum  Zea mays  Zinnia elegans  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Allium cepa (onion)  ( Select Species     Clear Species)
  acep12296 CF4495751
  acep13681 CF4409931
  acep14300 CF4367311
Amborella trichopoda (amborella)  ( Select Species     Clear Species)
  atri9247 2001661
Antirrhinum majus (snapdragon)  ( Select Species     Clear Species)
  amaj3999 S_AJ7958371
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha105861 At2g359201
  atha81913 At2g011301
  atha92704 At5g048951
  atha93303 At1g580501
  atha97581 At2g476802
  atha97928 At1g580601
Beta vulgaris (sugarbeet)  ( Select Species     Clear Species)
  bvul14974 TC16231
  bvul19013 TC11341
Capsicum annuum (pepper)  ( Select Species     Clear Species)
  cann16490 CA5258061
Citrus clementina ()  ( Select Species     Clear Species)
  ccle4143 PUT-148a-Citrus_clementina-61011
Eschscholzia californica (california poppy)  ( Select Species     Clear Species)
  ecal7738 384561
Gossypium arboreum (tree cotton)  ( Select Species     Clear Species)
  garb2860 S_BM3584531
  garb9510 S_BE0531301
Gossypium hirsutum (cotton (tetraploid))  ( Select Species     Clear Species)
  ghir67468 BM3584531
  ghir71006 BE0531301
Hordeum vulgare (barley)  ( Select Species     Clear Species)
  hvul57253 Hv.109561
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat47221 Lsa.32481
  lsat49357 Lsa.54551
  lsat49519 Lsa.56211
Lycopersicon esculentum (tomato)  ( Select Species     Clear Species)
  lesc67345 Les.82161
Manihot esculenta (cassava)  ( Select Species     Clear Species)
  mesc922 C_CK6497991
Medicago truncatula (barrel medic)  ( Select Species     Clear Species)
  mtru72542 TC1054981
Mesembryanthemum crystallinum (iceplant)  ( Select Species     Clear Species)
  mcry15697 CA8398431
  mcry20804 BE1314191
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat138192 Os04g352601
  osat177228 33.m00101 Protein sequence may be in error1
  osat182276 Os03g537601
  osat188159 Os10g332801
Phaseolus vulgaris (common bean)  ( Select Species     Clear Species)
  pvul8315 PUT-148a-Phaseolus_vulgaris-45101241
Pinus taeda (loblolly pine)  ( Select Species     Clear Species)
  ptae40911 TC802291
  ptae59501 TC791601
Populus euphratica ()  ( Select Species     Clear Species)
  peup5348 S_AJ7738532
Populus euramericana ()  ( Select Species     Clear Species)
  peur738 S_CX1806281
Populus trichocarpa (western balsam poplar)  ( Select Species     Clear Species)
  ptrc7456 PUT-148a-Populus_trichocarpa-114212171
Prunus armeniaca (apricot)  ( Select Species     Clear Species)
  parm1308 C_CV0453351
Prunus dulcis (almond)  ( Select Species     Clear Species)
  pdul1005 S_BU5749031
  pdul325 S_BU5730701
Triticum aestivum (bread wheat)  ( Select Species     Clear Species)
  taes125284 Ta.351461
  taes127948 Ta.132821
Zea mays (corn)  ( Select Species     Clear Species)
  zmay59823 Zm.250571
  zmay68249 Zm.235691
Zinnia elegans (zinnia)  ( Select Species     Clear Species)
  zele14513 PUT-148a-Zinnia_elegans-109471
  zele8445 PUT-148a-Zinnia_elegans-7561
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: acep12296 LENGTH: 245 aa
IPR007502
Helicase-associated region
PF04408 [33-124]T 3.6e-30 PF04408 HA2 HA2
IPR011709
Protein of unknown function DUF1605
PF07717 [161-245]T 2.1e-10 PF07717 DUF1605 DUF1605
no IPR
DOMAIN [208-245]T DOMAIN DOMAIN CYTOPLASMIC. DOMAIN CYTOPLASMIC.
PTHR18934 [2-245]T 5.1e-84 PTHR18934 ATP-DEPENDENT RNA HELICASE ATP-DEPENDENT RNA HELICASE
PTHR18934:SF1 [2-245]T 5.1e-84 PTHR18934:SF1 ATP-DEPENDENT RNA HELICASE ATP-DEPENDENT RNA HELICASE
SSF52540 [1-109]T 4e-14 SSF52540 P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases
TRANSMEM [188-207]T TRANSMEM TRANSMEM TRANSMEM

Subfamily ID: 2

SEQUENCE: atha97581 LENGTH: 1015 aa
IPR000571
Zinc finger, CCCH-type
PF00642 [728-753]T 0.58 PF00642 zf-CCCH[755-781]T 0.18 PF00642 zf-CCCH zf-CCCH
SM00356 [728-753]T 8.5E-5 SM00356 ZnF_C3H1[755-781]T 0.0011 SM00356 ZnF_C3H1 ZnF_C3H1
IPR001410
DEAD/DEAH box helicase
PS50136 [71-391]T 32.899 PS50136 HELICASE HELICASE
IPR001650
Helicase, C-terminal
PF00271 [291-384]T 2.5E-9 PF00271 Helicase_C Helicase_C
SM00490 [284-384]T 8.2E-12 SM00490 HELICc HELICc
IPR011545
DEAD/DEAH box helicase, N-terminal
PF00270 [28-186]T 0.0013 PF00270 DEAD DEAD
SM00487 [24-211]T 2.2E-23 SM00487 DEXDc DEXDc
Subfamily
1  2  

Sub family ID: 0
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001650: Helicase, C-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
IPR007502: Helicase-associated region
Molecular FunctionGO:0004386, helicase activity
 
Sub family ID: 1
IPR007502: Helicase-associated region
Molecular FunctionGO:0004386, helicase activity
IPR011709: Protein of unknown function DUF1605
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
 
Sub family ID: 2
IPR000571: Zn-finger, C-x8-C-x5-C-x3-H type
Molecular FunctionGO:0003676, nucleic acid binding
IPR001410: DEAD/DEAH box helicase
Molecular FunctionGO:0005524, ATP binding
GO:0008026, ATP-dependent helicase activity
IPR001650: Helicase, C-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
IPR011545: DEAD/DEAH box helicase, N-terminal
Molecular FunctionGO:0003676, nucleic acid binding
GO:0004386, helicase activity
GO:0005524, ATP binding
 
Department of Biology | University of North Carolina at Chapel Hill
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