Search results for family: 6817, total 9 Unipeptides retrieved.


Related families 2 families found.
Excluded Unipeptides View
Thumbnail sketch of subfamilies
 no tree available
Select Unipeptides in panel below to see alignment and detailed phylogeny
Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

View results sorted by

Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
atri7567  interPro197806Amborella trichopoda (amborella) 
ghir59241 TC35494Gossypium hirsutum (cotton (tetraploid)) 
lesc67665 Les.6593Lycopersicon esculentum (tomato) 
mtru80164 TC96187Medicago truncatula (barrel medic) 
osat150464 2836.m00128 Protein sequence may be in errorOryza sativa (rice) 
osat158266 Os01g65400Oryza sativa (rice) 
sorg46779 Sbi.9128Sorghum bicolor (sorghum) 
tmon2098 PUT-148a-Triticum_monococcum-3119Triticum monococcum (einkorn wheat) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
atha102325  interProAt1g34380Arabidopsis thaliana (thale cress) 
Species
Amborella trichopoda  Arabidopsis thaliana  Gossypium hirsutum  Lycopersicon esculentum  Medicago truncatula  Oryza sativa  Sorghum bicolor  Triticum monococcum  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Amborella trichopoda (amborella)  ( Select Species     Clear Species)
  atri7567 1978061
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha102325 At1g343802
Gossypium hirsutum (cotton (tetraploid))  ( Select Species     Clear Species)
  ghir59241 TC354941
Lycopersicon esculentum (tomato)  ( Select Species     Clear Species)
  lesc67665 Les.65931
Medicago truncatula (barrel medic)  ( Select Species     Clear Species)
  mtru80164 TC961871
Oryza sativa (rice)  ( Select Species     Clear Species)
  osat150464 2836.m00128 Protein sequence may be in error1
  osat158266 Os01g654001
Sorghum bicolor (sorghum)  ( Select Species     Clear Species)
  sorg46779 Sbi.91281
Triticum monococcum (einkorn wheat)  ( Select Species     Clear Species)
  tmon2098 PUT-148a-Triticum_monococcum-31191
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: atri7567 LENGTH: 165 aa
IPR000513
5'3'-Exonuclease N- and I-domain
PS50183 [50-165]T 17.542 PS50183 53EXO_I_DOMAIN 53EXO_I_DOMAIN
IPR002421
5'-3' exonuclease
PF02739 [50-108]T 7.1e-14 PF02739 5_3_exonuc_N 5_3_exonuc_N
no IPR
PTHR10133 [1-165]T 1.9e-35 PTHR10133 DNA POLYMERASE I DNA POLYMERASE I
PTHR10133:SF1 [1-165]T 1.9e-35 PTHR10133:SF1 DNA POLYMERASE I DNA POLYMERASE I
SSF88723 [1-129]T 9.7e-22 SSF88723 PIN domain-like PIN domain-like

Subfamily ID: 2

SEQUENCE: atha102325 LENGTH: 264 aa
IPR000513
5'3'-Exonuclease N- and I-domain
PS50183 [152-206]T 14.066 PS50183 53EXO_I_DOMAIN 53EXO_I_DOMAIN
IPR002421
5'-3' exonuclease
PF02739 [73-230]T 4.6e-11 PF02739 5_3_exonuc_N 5_3_exonuc_N
SM00475 [70-260]T 1.6e-05 SM00475 no description no description
no IPR
PTHR10133 [65-241]T 2.4e-52 PTHR10133 DNA POLYMERASE I DNA POLYMERASE I
PTHR10133:SF1 [65-241]T 2.4e-52 PTHR10133:SF1 DNA POLYMERASE I DNA POLYMERASE I
SSF88723 [72-220]T 1.9e-30 SSF88723 PIN domain-like PIN domain-like
Subfamily
1  2  

Sub family ID: 1
IPR000513: 5'3'-Exonuclease N- and I-domain
Molecular FunctionGO:0003677, DNA binding
GO:0004518, nuclease activity
IPR002421: 5'-3' exonuclease
Molecular FunctionGO:0003677, DNA binding
GO:0008409, 5'-3' exonuclease activity
 
Sub family ID: 2
IPR000513: 5'3'-Exonuclease N- and I-domain
Molecular FunctionGO:0003677, DNA binding
GO:0004518, nuclease activity
IPR002421: 5'-3' exonuclease
Molecular FunctionGO:0003677, DNA binding
GO:0008409, 5'-3' exonuclease activity
 
Department of Biology | University of North Carolina at Chapel Hill
Comments / Questions