Search results for family: 9769, total 12 Unipeptides retrieved.


Related families 7 families found.
Excluded Unipeptides View
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Select Unipeptides in panel below to see alignment and detailed phylogeny
Symbol Key = similarity to MITE sequence
= similarity to transposon sequence
= similarity to retrotransposon sequence
= similarity to other repeat sequence
 
= not found in mitochondrial proteome
= found in mitochondrial proteome
= not found in plastid proteome
= found in plastid proteome
 

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Subfamily
1  2  

Select members and view reduced alignment. and phylogenetic tree .
Unipeptide ID Alias Species
Subfamily ID: 1( Select Subfamily     Clear Subfamily)
aame3235 283152Acorus americanus (sweetflag) 
atri9301  interPro200246Amborella trichopoda (amborella) 
atha86360 At5g63960Arabidopsis thaliana (thale cress) 
crei4901 Cre.8828Chlamydomonas reinhardtii () 
gmax77675 Gma.158Glycine max (soybean) 
gsoj3237 PUT-148a-Glycine_soja-4970Glycine soja (wild soybean) 
ghir47792 CO083523Gossypium hirsutum (cotton (tetraploid)) 
harg756 S_CF093159Helianthus argophyllus () 
lsat46204 Lsa.2201Lactuca sativa (lettuce) 
pers7653 S_BU039281Prunus persica (peach) 
Subfamily ID: 2( Select Subfamily     Clear Subfamily)
lsat49196 Lsa.5290Lactuca sativa (lettuce) 
peup4678  interProS_AJ770758Populus euphratica () 
Species
Acorus americanus  Amborella trichopoda  Arabidopsis thaliana  Chlamydomonas reinhardtii  Glycine max  Glycine soja  Gossypium hirsutum  Helianthus argophyllus  Lactuca sativa  Populus euphratica  Prunus persica  

Select members and view reduced alignment and phylogenetic tree .
Unipeptide ID Alias Sub Family ID
Acorus americanus (sweetflag)  ( Select Species     Clear Species)
  aame3235 2831521
Amborella trichopoda (amborella)  ( Select Species     Clear Species)
  atri9301 2002461
Arabidopsis thaliana (thale cress)  ( Select Species     Clear Species)
  atha86360 At5g639601
Chlamydomonas reinhardtii ()  ( Select Species     Clear Species)
  crei4901 Cre.88281
Glycine max (soybean)  ( Select Species     Clear Species)
  gmax77675 Gma.1581
Glycine soja (wild soybean)  ( Select Species     Clear Species)
  gsoj3237 PUT-148a-Glycine_soja-49701
Gossypium hirsutum (cotton (tetraploid))  ( Select Species     Clear Species)
  ghir47792 CO0835231
Helianthus argophyllus ()  ( Select Species     Clear Species)
  harg756 S_CF0931591
Lactuca sativa (lettuce)  ( Select Species     Clear Species)
  lsat46204 Lsa.22011
  lsat49196 Lsa.52902
Populus euphratica ()  ( Select Species     Clear Species)
  peup4678 S_AJ7707582
Prunus persica (peach)  ( Select Species     Clear Species)
  pers7653 S_BU0392811
Subfamily
1  2  

Subfamily ID: 1

SEQUENCE: atri9301 LENGTH: 205 aa
IPR006134
DNA polymerase B region
PF00136 [1-205]T 3.9e-99 PF00136 DNA_pol_B DNA_pol_B
IPR006172
DNA-directed DNA polymerase B
PR00106 [33-45]T 9.4e-06 PR00106 DNAPOLB[94-102]T 9.4e-06 PR00106 DNAPOLB DNAPOLB
PS00116 [96-104]T 8e-5 PS00116 DNA_POLYMERASE_B DNA_POLYMERASE_B
no IPR
PTHR10322 [1-205]T 1.4e-143 PTHR10322 DNA POLYMERASE B FAMILY MEMBER DNA POLYMERASE B FAMILY MEMBER
PTHR10322:SF4 [1-205]T 1.4e-143 PTHR10322:SF4 DNA POLYMERASE DELTA CATALYTIC SUBUNIT DNA POLYMERASE DELTA CATALYTIC SUBUNIT
SSF56672 [1-205]T 1.2e-71 SSF56672 DNA/RNA polymerases DNA/RNA polymerases

Subfamily ID: 2

SEQUENCE: peup4678 LENGTH: 177 aa
IPR006134
DNA polymerase B region
PF00136 [1-174]T 1.1e-44 PF00136 DNA_pol_B DNA_pol_B
IPR006172
DNA-directed DNA polymerase B
PS00116 [40-48]T 8e-5 PS00116 DNA_POLYMERASE_B DNA_POLYMERASE_B
no IPR
PTHR10322 [2-177]T 1e-119 PTHR10322 DNA POLYMERASE B FAMILY MEMBER DNA POLYMERASE B FAMILY MEMBER
PTHR10322:SF5 [2-177]T 1e-119 PTHR10322:SF5 DNA POLYMERASE ZETA CATALYTIC SUBUNIT DNA POLYMERASE ZETA CATALYTIC SUBUNIT
SSF56672 [1-175]T 2.4e-48 SSF56672 DNA/RNA polymerases DNA/RNA polymerases
Subfamily
1  2  

Sub family ID: 0
IPR006134: DNA polymerase B region
Biological ProcessGO:0006260, DNA replication
Molecular FunctionGO:0000166, nucleotide binding
GO:0003677, DNA binding
GO:0003887, DNA-directed DNA polymerase activity
 
Sub family ID: 1
IPR006134: DNA polymerase B region
Biological ProcessGO:0006260, DNA replication
Molecular FunctionGO:0000166, nucleotide binding
GO:0003677, DNA binding
GO:0003887, DNA-directed DNA polymerase activity
IPR006172: DNA-directed DNA polymerase B
Biological ProcessGO:0006260, DNA replication
Molecular FunctionGO:0000166, nucleotide binding
GO:0003677, DNA binding
GO:0003887, DNA-directed DNA polymerase activity
GO:0008408, 3'-5' exonuclease activity
 
Sub family ID: 2
IPR006134: DNA polymerase B region
Biological ProcessGO:0006260, DNA replication
Molecular FunctionGO:0000166, nucleotide binding
GO:0003677, DNA binding
GO:0003887, DNA-directed DNA polymerase activity
IPR006172: DNA-directed DNA polymerase B
Biological ProcessGO:0006260, DNA replication
Molecular FunctionGO:0000166, nucleotide binding
GO:0003677, DNA binding
GO:0003887, DNA-directed DNA polymerase activity
GO:0008408, 3'-5' exonuclease activity
 
Department of Biology | University of North Carolina at Chapel Hill
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