Retrieve information for predicted peptide.

Keyword terms for  
contains starts with ends with is regular expression (help)

Retrieve a list of members of a family from all species based on keywords.

Keyword terms   
contains starts with ends with is regular expression (help)

 

Use the tree below to search for Unipeptide families that are present ("yes" radio button) or absent ("no" radio button) within particular species or clades.
All searchable genera (and the numbers of species in each) are shown in the phylogeny above.
Clades at all levels can be expanded or collapsed.
Selecting a button for a clade will propagate that selection to all species within that clade.
For taxa in which there are only a few Unipeptides, it is generally safer to use "maybe" instead of "yes".


 
Y
E
S		 N
O		 M
A
Y
B
E
Powerd By JavaScript Tree Menu

Enter sequence and choose search parameters.


Program Database
Enter sequence below in FASTA format

Or load it from disk

Set subsequence: From       To

The query sequence is filtered for low complexity regions by default

Filter Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Frame shift penalty for blastx

Other advanced options:     


Browse interpro descriptions or GO terms and click on associated phytome families!
This is a good way become acquainted with Phytome families.

 
Department of Biology | University of North Carolina at Chapel Hill
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